RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 KRTAP9-2Q9BYQ4 174 aa2.61□□□□□ -1.99
VCL-206ENST00000623461 KRTAP20-1Q3LI63 56 aa2.61□□□□□ -1.99
VCL-206ENST00000623461 MT1AP04731 61 aa2.6□□□□□ -1.99
VCL-206ENST00000623461 KRTAP19-7Q3SYF9 63 aa2.6□□□□□ -1.99
VCL-206ENST00000623461 KRTAP9-6A0A140TA67 174 aa2.57□□□□□ -2
VCL-206ENST00000623461 KMT2CQ8NEZ4 4911 aaKnown RBP2.56□□□□□ -2
VCL-206ENST00000623461 KRTAP4-3Q9BYR4 195 aa2.55□□□□□ -2
VCL-206ENST00000623461 LCE1DQ5T752 114 aa2.55□□□□□ -2
VCL-206ENST00000623461 LCE1BQ5T7P3 118 aa2.55□□□□□ -2
VCL-206ENST00000623461 HYDINQ4G0P3 5121 aa2.54□□□□□ -2
VCL-206ENST00000623461 KIAA1109Q2LD37 5005 aa2.53□□□□□ -2
VCL-206ENST00000623461 KRTAP9-6A8MVA2 160 aa2.51□□□□□ -2.01
VCL-206ENST00000623461 LCE1AQ5T7P2 110 aa2.49□□□□□ -2.01
VCL-206ENST00000623461 KRTAP4-9Q9BYQ8 210 aa2.48□□□□□ -2.01
VCL-206ENST00000623461 LCE5AQ5TCM9 118 aa2.47□□□□□ -2.01
VCL-206ENST00000623461 LCE4AQ5TA78 99 aa2.47□□□□□ -2.01
VCL-206ENST00000623461 KRTAP6-2Q3LI66 62 aa2.45□□□□□ -2.02
VCL-206ENST00000623461 KRTAP9-7A8MTY7 169 aa2.43□□□□□ -2.02
VCL-206ENST00000623461 LCE2AQ5TA79 106 aaPredicted RBP2.42□□□□□ -2.02
VCL-206ENST00000623461 KRTAP6-3Q3LI67 103 aa2.4□□□□□ -2.02
VCL-206ENST00000623461 BIRC6Q9NR09 4857 aa2.38□□□□□ -2.03
VCL-206ENST00000623461 KRTAP6-1Q3LI64 71 aa2.37□□□□□ -2.03
VCL-206ENST00000623461 HMCN2Q8NDA2 5059 aa2.36□□□□□ -2.03
VCL-206ENST00000623461 KRTAP2-2Q9BYT5 123 aa2.36□□□□□ -2.03
VCL-206ENST00000623461 KRTAP9-4Q9BYQ2 154 aa2.36□□□□□ -2.03
VCL-206ENST00000623461 LCE1CQ5T751 118 aa2.34□□□□□ -2.03
VCL-206ENST00000623461 LCE1EQ5T753 118 aa2.34□□□□□ -2.03
VCL-206ENST00000623461 LCE1FQ5T754 118 aa2.34□□□□□ -2.03
VCL-206ENST00000623461 KRTAP9-9Q9BYP9 154 aa2.28□□□□□ -2.04
VCL-206ENST00000623461 PCLOQ9Y6V0 5065 aa2.27□□□□□ -2.05
VCL-206ENST00000623461 SYNE1Q8NF91 8797 aaKnown RBP2.27□□□□□ -2.05
VCL-206ENST00000623461 ABCA13Q86UQ4 5058 aa2.23□□□□□ -2.05
VCL-206ENST00000623461 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.22□□□□□ -2.05
VCL-206ENST00000623461 EPPK1P58107 5090 aaKnown RBP2.2□□□□□ -2.06
VCL-206ENST00000623461 FAT4Q6V0I7 4981 aa2.17□□□□□ -2.06
VCL-206ENST00000623461 FSIP2Q5CZC0 6907 aa2.15□□□□□ -2.07
VCL-206ENST00000623461 RNF213Q63HN8 5207 aa2.14□□□□□ -2.07
VCL-206ENST00000623461 UBR4Q5T4S7 5183 aa2.1□□□□□ -2.07
VCL-206ENST00000623461 KRTAP5-9P26371 169 aa2.09□□□□□ -2.07
VCL-206ENST00000623461 SYNE2Q8WXH0 6885 aaKnown RBP2.08□□□□□ -2.08
VCL-206ENST00000623461 OBSCNQ5VST9 7968 aa2.08□□□□□ -2.08
VCL-206ENST00000623461 KRTAP4-11Q9BYQ6 195 aa2.01□□□□□ -2.09
VCL-206ENST00000623461 KRTAP5-5Q701N2 237 aaPredicted RBP1.99□□□□□ -2.09
VCL-206ENST00000623461 MUC2Q02817 5179 aa1.97□□□□□ -2.09
VCL-206ENST00000623461 KRTAP5-4Q6L8H1 288 aa1.86□□□□□ -2.11
VCL-206ENST00000623461 DSTQ03001 7570 aaKnown RBP1.83□□□□□ -2.12
VCL-206ENST00000623461 USH2AO75445 5202 aa1.82□□□□□ -2.12
VCL-206ENST00000623461 FCGBPQ9Y6R7 5405 aaPredicted RBP1.8□□□□□ -2.12
VCL-206ENST00000623461 KRTAP20-2Q3LI61 65 aa1.78□□□□□ -2.12
VCL-206ENST00000623461 KMT2DO14686 5537 aa1.77□□□□□ -2.13
VCL-206ENST00000623461 KRTAP4-6Q9BYQ5 205 aa1.73□□□□□ -2.13
VCL-206ENST00000623461 SSPOA2VEC9 5147 aa1.72□□□□□ -2.13
VCL-206ENST00000623461 MACF1Q9UPN3 7388 aaKnown RBP1.71□□□□□ -2.14
VCL-206ENST00000623461 KRTAP4-4Q9BYR3 166 aa1.65□□□□□ -2.15
VCL-206ENST00000623461 NEBP20929 6669 aa1.63□□□□□ -2.15
VCL-206ENST00000623461 KRTAP4-12Q9BQ66 201 aa1.61□□□□□ -2.15
VCL-206ENST00000623461 KRTAP4-2Q9BYR5 136 aa1.61□□□□□ -2.15
VCL-206ENST00000623461 KRTAP5-3Q6L8H2 238 aa1.58□□□□□ -2.16
VCL-206ENST00000623461 MDN1Q9NU22 5596 aa1.56□□□□□ -2.16
VCL-206ENST00000623461 KRTAP5-2Q701N4 177 aa1.56□□□□□ -2.16
VCL-206ENST00000623461 MUC12Q9UKN1 5478 aa1.55□□□□□ -2.16
VCL-206ENST00000623461 GPR98Q8WXG9 6306 aa1.53□□□□□ -2.16
VCL-206ENST00000623461 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
VCL-206ENST00000623461 KRTAP5-10Q6L8G5 202 aa1.52□□□□□ -2.17
VCL-206ENST00000623461 MUC5ACP98088 5654 aa1.47□□□□□ -2.17
VCL-206ENST00000623461 KRTAP5-8O75690 187 aa1.43□□□□□ -2.18
VCL-206ENST00000623461 PHGR1C9JFL3 82 aa1.42□□□□□ -2.18
VCL-206ENST00000623461 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.41□□□□□ -2.18
VCL-206ENST00000623461 KRTAP5-11Q6L8G4 156 aa1.37□□□□□ -2.19
VCL-206ENST00000623461 KRTAP21-1Q3LI58 79 aa1.35□□□□□ -2.19
VCL-206ENST00000623461 AHNAK2Q8IVF2 5795 aa1.31□□□□□ -2.2
VCL-206ENST00000623461 HMCN1Q96RW7 5635 aa1.28□□□□□ -2.2
VCL-206ENST00000623461 KRTAP5-1Q6L8H4 278 aa1.28□□□□□ -2.2
VCL-206ENST00000623461 KRTAP5-7Q6L8G8 165 aa1.26□□□□□ -2.21
VCL-206ENST00000623461 KRTAP21-2Q3LI59 83 aa1.23□□□□□ -2.21
VCL-206ENST00000623461 MUC5BQ9HC84 5762 aaPredicted RBP1.23□□□□□ -2.21
VCL-206ENST00000623461 AHNAKQ09666 5890 aaKnown RBP1.23□□□□□ -2.21
VCL-206ENST00000623461 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 100.8 ms