RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 MT1GP13640 62 aa3.24□□□□□ -1.89
GGA3-223ENST00000621870 LCE3BQ5TA77 95 aa3.18□□□□□ -1.9
GGA3-223ENST00000621870 KRTAP12-4P60329 112 aa3.16□□□□□ -1.9
GGA3-223ENST00000621870 KRTAP19-3Q7Z4W3 81 aa3.14□□□□□ -1.91
GGA3-223ENST00000621870 KRTAP19-6Q3LI70 58 aa3.13□□□□□ -1.91
GGA3-223ENST00000621870 KRTAP4-7Q9BYR0 210 aa3.13□□□□□ -1.91
GGA3-223ENST00000621870 DSTQ03001 7570 aaKnown RBP3.12□□□□□ -1.91
GGA3-223ENST00000621870 KMT2DO14686 5537 aa3.11□□□□□ -1.91
GGA3-223ENST00000621870 KRTAP9-6A0A140TA67 174 aa3.09□□□□□ -1.92
GGA3-223ENST00000621870 MT1EP04732 61 aa3.09□□□□□ -1.92
GGA3-223ENST00000621870 MT1LQ93083 61 aa3.08□□□□□ -1.92
GGA3-223ENST00000621870 SYNE2Q8WXH0 6885 aaKnown RBP3.08□□□□□ -1.92
GGA3-223ENST00000621870 SSPOA2VEC9 5147 aa3.03□□□□□ -1.92
GGA3-223ENST00000621870 FCGBPQ9Y6R7 5405 aaPredicted RBP3□□□□□ -1.93
GGA3-223ENST00000621870 MACF1Q9UPN3 7388 aaKnown RBP3□□□□□ -1.93
GGA3-223ENST00000621870 MT1MQ8N339 61 aa2.99□□□□□ -1.93
GGA3-223ENST00000621870 MT4P47944 62 aa2.97□□□□□ -1.93
GGA3-223ENST00000621870 KRTAP4-3Q9BYR4 195 aa2.96□□□□□ -1.93
GGA3-223ENST00000621870 MUC12Q9UKN1 5478 aa2.96□□□□□ -1.94
GGA3-223ENST00000621870 KRTAP9-7A8MTY7 169 aa2.93□□□□□ -1.94
GGA3-223ENST00000621870 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
GGA3-223ENST00000621870 KRTAP19-7Q3SYF9 63 aa2.92□□□□□ -1.94
GGA3-223ENST00000621870 LOC100996750A0A140TA64 210 aa2.91□□□□□ -1.94
GGA3-223ENST00000621870 LCE3EQ5T5B0 92 aa2.86□□□□□ -1.95
GGA3-223ENST00000621870 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.84□□□□□ -1.96
GGA3-223ENST00000621870 MT3P25713 68 aa2.83□□□□□ -1.96
GGA3-223ENST00000621870 KRTAP6-3Q3LI67 103 aa2.79□□□□□ -1.96
GGA3-223ENST00000621870 KRTAP20-1Q3LI63 56 aa2.78□□□□□ -1.96
GGA3-223ENST00000621870 KRTAP9-6A8MVA2 160 aa2.77□□□□□ -1.97
GGA3-223ENST00000621870 KRTAP2-3P0C7H8 128 aa2.75□□□□□ -1.97
GGA3-223ENST00000621870 LCE1AQ5T7P2 110 aa2.75□□□□□ -1.97
GGA3-223ENST00000621870 KRTAP2-4Q9BYR9 128 aa2.75□□□□□ -1.97
GGA3-223ENST00000621870 KRTAP2-1Q9BYU5 128 aa2.75□□□□□ -1.97
GGA3-223ENST00000621870 MDN1Q9NU22 5596 aa2.74□□□□□ -1.97
GGA3-223ENST00000621870 LCE1DQ5T752 114 aa2.74□□□□□ -1.97
GGA3-223ENST00000621870 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
GGA3-223ENST00000621870 MT1AP04731 61 aa2.72□□□□□ -1.97
GGA3-223ENST00000621870 LCE5AQ5TCM9 118 aa2.68□□□□□ -1.98
GGA3-223ENST00000621870 KRTAP4-9Q9BYQ8 210 aa2.68□□□□□ -1.98
GGA3-223ENST00000621870 KRTAP2-2Q9BYT5 123 aa2.64□□□□□ -1.99
GGA3-223ENST00000621870 LCE1EQ5T753 118 aa2.61□□□□□ -1.99
GGA3-223ENST00000621870 KRTAP6-1Q3LI64 71 aa2.6□□□□□ -1.99
GGA3-223ENST00000621870 KRTAP6-2Q3LI66 62 aa2.57□□□□□ -2
GGA3-223ENST00000621870 PRM1P04553 51 aa2.56□□□□□ -2
GGA3-223ENST00000621870 LCE1FQ5T754 118 aa2.56□□□□□ -2
GGA3-223ENST00000621870 NEBP20929 6669 aa2.56□□□□□ -2
GGA3-223ENST00000621870 LCE4AQ5TA78 99 aa2.54□□□□□ -2
GGA3-223ENST00000621870 MUC19Q7Z5P9 8384 aa2.54□□□□□ -2
GGA3-223ENST00000621870 GPR98Q8WXG9 6306 aa2.52□□□□□ -2.01
GGA3-223ENST00000621870 KRTAP9-4Q9BYQ2 154 aa2.49□□□□□ -2.01
GGA3-223ENST00000621870 KRTAP5-9P26371 169 aa2.44□□□□□ -2.02
GGA3-223ENST00000621870 KRTAP4-6Q9BYQ5 205 aa2.33□□□□□ -2.04
GGA3-223ENST00000621870 LCE1CQ5T751 118 aa2.29□□□□□ -2.04
GGA3-223ENST00000621870 KRTAP9-9Q9BYP9 154 aa2.26□□□□□ -2.05
GGA3-223ENST00000621870 KRTAP20-2Q3LI61 65 aa2.23□□□□□ -2.05
GGA3-223ENST00000621870 HMCN1Q96RW7 5635 aa2.14□□□□□ -2.07
GGA3-223ENST00000621870 KRTAP5-5Q701N2 237 aaPredicted RBP2.14□□□□□ -2.07
GGA3-223ENST00000621870 MUC5ACP98088 5654 aa2.12□□□□□ -2.07
GGA3-223ENST00000621870 KRTAP4-11Q9BYQ6 195 aa2.05□□□□□ -2.08
GGA3-223ENST00000621870 KRTAP5-4Q6L8H1 288 aa2.02□□□□□ -2.09
GGA3-223ENST00000621870 KRTAP4-12Q9BQ66 201 aa2□□□□□ -2.09
GGA3-223ENST00000621870 KRTAP4-2Q9BYR5 136 aa2□□□□□ -2.09
GGA3-223ENST00000621870 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
GGA3-223ENST00000621870 KRTAP4-4Q9BYR3 166 aa1.95□□□□□ -2.1
GGA3-223ENST00000621870 KRTAP5-3Q6L8H2 238 aa1.95□□□□□ -2.1
GGA3-223ENST00000621870 MUC5BQ9HC84 5762 aaPredicted RBP1.79□□□□□ -2.12
GGA3-223ENST00000621870 KRTAP5-8O75690 187 aa1.77□□□□□ -2.13
GGA3-223ENST00000621870 KRTAP5-2Q701N4 177 aa1.7□□□□□ -2.14
GGA3-223ENST00000621870 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
GGA3-223ENST00000621870 KRTAP5-10Q6L8G5 202 aa1.6□□□□□ -2.15
GGA3-223ENST00000621870 KRTAP5-1Q6L8H4 278 aa1.56□□□□□ -2.16
GGA3-223ENST00000621870 PHGR1C9JFL3 82 aa1.49□□□□□ -2.17
GGA3-223ENST00000621870 KRTAP5-11Q6L8G4 156 aa1.45□□□□□ -2.18
GGA3-223ENST00000621870 KRTAP5-7Q6L8G8 165 aa1.44□□□□□ -2.18
GGA3-223ENST00000621870 KRTAP21-2Q3LI59 83 aa1.4□□□□□ -2.19
GGA3-223ENST00000621870 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.38□□□□□ -2.19
GGA3-223ENST00000621870 KRTAP21-1Q3LI58 79 aa1.34□□□□□ -2.2
GGA3-223ENST00000621870 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 79.6 ms