RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SPRR2AP35326 72 aa3.41□□□□□ -1.86
CLK1-215ENST00000621181 SPRR2FQ96RM1 72 aa3.41□□□□□ -1.86
CLK1-215ENST00000621181 A0A0D9SG42 100 aa3.4□□□□□ -1.86
CLK1-215ENST00000621181 A0A0A0MQY5 61 aa3.4□□□□□ -1.87
CLK1-215ENST00000621181 KRTAP12-2P59991 146 aa3.39□□□□□ -1.87
CLK1-215ENST00000621181 KRTAP12-1P59990 96 aa3.38□□□□□ -1.87
CLK1-215ENST00000621181 CRIPTQ9P021 101 aa3.37□□□□□ -1.87
CLK1-215ENST00000621181 M0QZ58 72 aa3.36□□□□□ -1.87
CLK1-215ENST00000621181 KRTAP2-2Q9BYT5 123 aa3.35□□□□□ -1.87
CLK1-215ENST00000621181 KRTAP2-1Q9BYU5 128 aa3.35□□□□□ -1.87
CLK1-215ENST00000621181 PRO2289Q9P1D8 64 aa3.34□□□□□ -1.87
CLK1-215ENST00000621181 KRTAP8-1Q8IUC2 63 aa3.33□□□□□ -1.88
CLK1-215ENST00000621181 SPRR2DP22532 72 aa3.29□□□□□ -1.88
CLK1-215ENST00000621181 C10orf95Q9H7T3 257 aa3.29□□□□□ -1.88
CLK1-215ENST00000621181 MT1XP80297 61 aa3.28□□□□□ -1.88
CLK1-215ENST00000621181 SPINT4Q6UDR6 99 aa3.28□□□□□ -1.88
CLK1-215ENST00000621181 PLAC4Q8WY50 150 aa3.25□□□□□ -1.89
CLK1-215ENST00000621181 R4GN34 69 aa3.21□□□□□ -1.89
CLK1-215ENST00000621181 KRTAP10-7P60409 375 aaPredicted RBP3.13□□□□□ -1.91
CLK1-215ENST00000621181 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
CLK1-215ENST00000621181 DSTQ03001 7570 aaKnown RBP3.1□□□□□ -1.91
CLK1-215ENST00000621181 KRTAP10-12P60413 245 aa3.09□□□□□ -1.91
CLK1-215ENST00000621181 PP632Q6XCG6 107 aa3.05□□□□□ -1.92
CLK1-215ENST00000621181 GPR98Q8WXG9 6306 aa3.04□□□□□ -1.92
CLK1-215ENST00000621181 NDUFAF8A1L188 74 aa3.03□□□□□ -1.92
CLK1-215ENST00000621181 CAMK2N1Q7Z7J9 78 aa3.03□□□□□ -1.92
CLK1-215ENST00000621181 MT3P25713 68 aa2.99□□□□□ -1.93
CLK1-215ENST00000621181 TNP1P09430 55 aa2.96□□□□□ -1.94
CLK1-215ENST00000621181 KRTAP19-3Q7Z4W3 81 aa2.95□□□□□ -1.94
CLK1-215ENST00000621181 KRTAP5-11Q6L8G4 156 aa2.93□□□□□ -1.94
CLK1-215ENST00000621181 KRTAP19-7Q3SYF9 63 aa2.92□□□□□ -1.94
CLK1-215ENST00000621181 SPRR5A0A1B0GTR4 108 aa2.91□□□□□ -1.94
CLK1-215ENST00000621181 MT1EP04732 61 aa2.91□□□□□ -1.94
CLK1-215ENST00000621181 MT4P47944 62 aa2.91□□□□□ -1.94
CLK1-215ENST00000621181 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
CLK1-215ENST00000621181 LCE1EQ5T753 118 aa2.86□□□□□ -1.95
CLK1-215ENST00000621181 HMCN1Q96RW7 5635 aa2.84□□□□□ -1.95
CLK1-215ENST00000621181 MT1GP13640 62 aa2.84□□□□□ -1.95
CLK1-215ENST00000621181 LCE3AQ5TA76 89 aa2.84□□□□□ -1.95
CLK1-215ENST00000621181 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.96
CLK1-215ENST00000621181 KRTAP19-5Q3LI72 72 aa2.81□□□□□ -1.96
CLK1-215ENST00000621181 LUZP6Q538Z0 58 aa2.81□□□□□ -1.96
CLK1-215ENST00000621181 MT1MQ8N339 61 aa2.79□□□□□ -1.96
CLK1-215ENST00000621181 KRTAP5-4Q6L8H1 288 aa2.77□□□□□ -1.97
CLK1-215ENST00000621181 AHNAK2Q8IVF2 5795 aa2.76□□□□□ -1.97
CLK1-215ENST00000621181 KRTAP5-7Q6L8G8 165 aa2.75□□□□□ -1.97
CLK1-215ENST00000621181 MT1LQ93083 61 aa2.75□□□□□ -1.97
CLK1-215ENST00000621181 KRTAP4-3Q9BYR4 195 aa2.74□□□□□ -1.97
CLK1-215ENST00000621181 LCE3CQ5T5A8 94 aa2.73□□□□□ -1.97
CLK1-215ENST00000621181 KRTAP12-3P60328 96 aa2.7□□□□□ -1.98
CLK1-215ENST00000621181 KRTAP20-2Q3LI61 65 aa2.65□□□□□ -1.99
CLK1-215ENST00000621181 KRTAP9-6A8MVA2 160 aa2.62□□□□□ -1.99
CLK1-215ENST00000621181 KRTAP12-4P60329 112 aa2.59□□□□□ -1.99
CLK1-215ENST00000621181 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
CLK1-215ENST00000621181 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
CLK1-215ENST00000621181 KRTAP4-4Q9BYR3 166 aa2.54□□□□□ -2
CLK1-215ENST00000621181 LCE3EQ5T5B0 92 aa2.51□□□□□ -2.01
CLK1-215ENST00000621181 INE1O15225 51 aa2.48□□□□□ -2.01
CLK1-215ENST00000621181 SYNE1Q8NF91 8797 aaKnown RBP2.44□□□□□ -2.02
CLK1-215ENST00000621181 KRTAP5-8O75690 187 aa2.4□□□□□ -2.03
CLK1-215ENST00000621181 KRTAP5-2Q701N4 177 aa2.38□□□□□ -2.03
CLK1-215ENST00000621181 OBSCNQ5VST9 7968 aa2.36□□□□□ -2.03
CLK1-215ENST00000621181 KRTAP6-1Q3LI64 71 aa2.34□□□□□ -2.03
CLK1-215ENST00000621181 MUC5ACP98088 5654 aa2.34□□□□□ -2.04
CLK1-215ENST00000621181 MT1AP04731 61 aa2.33□□□□□ -2.04
CLK1-215ENST00000621181 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
CLK1-215ENST00000621181 KRTAP6-2Q3LI66 62 aa2.28□□□□□ -2.04
CLK1-215ENST00000621181 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.04
CLK1-215ENST00000621181 LCE3DQ9BYE3 92 aa2.05□□□□□ -2.08
CLK1-215ENST00000621181 LCE1BQ5T7P3 118 aa1.95□□□□□ -2.1
CLK1-215ENST00000621181 LCE1CQ5T751 118 aa1.89□□□□□ -2.11
CLK1-215ENST00000621181 PRM1P04553 51 aa1.82□□□□□ -2.12
CLK1-215ENST00000621181 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
CLK1-215ENST00000621181 MUC19Q7Z5P9 8384 aa1.61□□□□□ -2.15
CLK1-215ENST00000621181 KRTAP21-2Q3LI59 83 aa1.53□□□□□ -2.16
CLK1-215ENST00000621181 KRTAP21-1Q3LI58 79 aa1.28□□□□□ -2.2
CLK1-215ENST00000621181 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 93.4 ms