RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 SPRR2EP22531 72 aa4.53□□□□□ -1.68
CNOT3-210ENST00000618939 SPRR2BP35325 72 aa4.53□□□□□ -1.68
CNOT3-210ENST00000618939 SPRR2AP35326 72 aa4.53□□□□□ -1.68
CNOT3-210ENST00000618939 KRTAP19-6Q3LI70 58 aa4.52□□□□□ -1.69
CNOT3-210ENST00000618939 MT1MQ8N339 61 aa4.44□□□□□ -1.7
CNOT3-210ENST00000618939 KRTAP4-3Q9BYR4 195 aa4.4□□□□□ -1.71
CNOT3-210ENST00000618939 SPRR2DP22532 72 aa4.4□□□□□ -1.71
CNOT3-210ENST00000618939 LOC100996750A0A140TA64 210 aa4.39□□□□□ -1.71
CNOT3-210ENST00000618939 SYNE1Q8NF91 8797 aaKnown RBP4.35□□□□□ -1.71
CNOT3-210ENST00000618939 KRTAP9-6A8MVA2 160 aa4.33□□□□□ -1.72
CNOT3-210ENST00000618939 KRTAP9-6A0A140TA67 174 aa4.33□□□□□ -1.72
CNOT3-210ENST00000618939 LCE3DQ9BYE3 92 aa4.33□□□□□ -1.72
CNOT3-210ENST00000618939 KRTAP2-3P0C7H8 128 aa4.32□□□□□ -1.72
CNOT3-210ENST00000618939 KRTAP2-4Q9BYR9 128 aa4.32□□□□□ -1.72
CNOT3-210ENST00000618939 KRTAP2-1Q9BYU5 128 aa4.32□□□□□ -1.72
CNOT3-210ENST00000618939 LCE2DQ5TA82 110 aaPredicted RBP4.29□□□□□ -1.72
CNOT3-210ENST00000618939 LCE3EQ5T5B0 92 aa4.26□□□□□ -1.73
CNOT3-210ENST00000618939 USH2AO75445 5202 aa4.25□□□□□ -1.73
CNOT3-210ENST00000618939 KMT2DO14686 5537 aa4.18□□□□□ -1.74
CNOT3-210ENST00000618939 FCGBPQ9Y6R7 5405 aaPredicted RBP4.09□□□□□ -1.75
CNOT3-210ENST00000618939 MT1AP04731 61 aa4.07□□□□□ -1.76
CNOT3-210ENST00000618939 KRTAP9-7A8MTY7 169 aa4.05□□□□□ -1.76
CNOT3-210ENST00000618939 LCE5AQ5TCM9 118 aa4.04□□□□□ -1.76
CNOT3-210ENST00000618939 KRTAP4-9Q9BYQ8 210 aa4.04□□□□□ -1.76
CNOT3-210ENST00000618939 DSTQ03001 7570 aaKnown RBP4.03□□□□□ -1.76
CNOT3-210ENST00000618939 OBSCNQ5VST9 7968 aa4.02□□□□□ -1.77
CNOT3-210ENST00000618939 MT3P25713 68 aa4.02□□□□□ -1.77
CNOT3-210ENST00000618939 SYNE2Q8WXH0 6885 aaKnown RBP3.99□□□□□ -1.77
CNOT3-210ENST00000618939 PRM1P04553 51 aa3.97□□□□□ -1.77
CNOT3-210ENST00000618939 KRTAP20-1Q3LI63 56 aa3.95□□□□□ -1.78
CNOT3-210ENST00000618939 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.95□□□□□ -1.78
CNOT3-210ENST00000618939 KRTAP6-1Q3LI64 71 aa3.94□□□□□ -1.78
CNOT3-210ENST00000618939 MACF1Q9UPN3 7388 aaKnown RBP3.93□□□□□ -1.78
CNOT3-210ENST00000618939 SSPOA2VEC9 5147 aa3.93□□□□□ -1.78
CNOT3-210ENST00000618939 MT4P47944 62 aa3.9□□□□□ -1.79
CNOT3-210ENST00000618939 MUC12Q9UKN1 5478 aa3.88□□□□□ -1.79
CNOT3-210ENST00000618939 LCE1AQ5T7P2 110 aa3.87□□□□□ -1.79
CNOT3-210ENST00000618939 KRTAP6-3Q3LI67 103 aa3.82□□□□□ -1.8
CNOT3-210ENST00000618939 GPR98Q8WXG9 6306 aa3.79□□□□□ -1.8
CNOT3-210ENST00000618939 KRTAP9-4Q9BYQ2 154 aa3.75□□□□□ -1.81
CNOT3-210ENST00000618939 KRTAP6-2Q3LI66 62 aa3.73□□□□□ -1.81
CNOT3-210ENST00000618939 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
CNOT3-210ENST00000618939 KRTAP2-2Q9BYT5 123 aa3.62□□□□□ -1.83
CNOT3-210ENST00000618939 LCE1BQ5T7P3 118 aa3.59□□□□□ -1.83
CNOT3-210ENST00000618939 KRTAP5-9P26371 169 aa3.58□□□□□ -1.84
CNOT3-210ENST00000618939 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
CNOT3-210ENST00000618939 NEBP20929 6669 aa3.45□□□□□ -1.86
CNOT3-210ENST00000618939 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
CNOT3-210ENST00000618939 KRTAP5-5Q701N2 237 aaPredicted RBP3.27□□□□□ -1.89
CNOT3-210ENST00000618939 KRTAP4-6Q9BYQ5 205 aa3.25□□□□□ -1.89
CNOT3-210ENST00000618939 KRTAP20-2Q3LI61 65 aa3.18□□□□□ -1.9
CNOT3-210ENST00000618939 MUC19Q7Z5P9 8384 aa3.17□□□□□ -1.9
CNOT3-210ENST00000618939 LCE1CQ5T751 118 aa3.14□□□□□ -1.91
CNOT3-210ENST00000618939 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
CNOT3-210ENST00000618939 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
CNOT3-210ENST00000618939 KRTAP9-9Q9BYP9 154 aa3.12□□□□□ -1.91
CNOT3-210ENST00000618939 KRTAP4-11Q9BYQ6 195 aa2.96□□□□□ -1.93
CNOT3-210ENST00000618939 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
CNOT3-210ENST00000618939 MUC5ACP98088 5654 aa2.79□□□□□ -1.96
CNOT3-210ENST00000618939 AHNAK2Q8IVF2 5795 aa2.76□□□□□ -1.97
CNOT3-210ENST00000618939 HMCN1Q96RW7 5635 aa2.72□□□□□ -1.97
CNOT3-210ENST00000618939 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
CNOT3-210ENST00000618939 KRTAP5-3Q6L8H2 238 aa2.67□□□□□ -1.98
CNOT3-210ENST00000618939 KRTAP4-4Q9BYR3 166 aa2.67□□□□□ -1.98
CNOT3-210ENST00000618939 KRTAP4-12Q9BQ66 201 aa2.58□□□□□ -2
CNOT3-210ENST00000618939 KRTAP4-2Q9BYR5 136 aa2.58□□□□□ -2
CNOT3-210ENST00000618939 KRTAP5-10Q6L8G5 202 aa2.55□□□□□ -2
CNOT3-210ENST00000618939 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
CNOT3-210ENST00000618939 KRTAP5-1Q6L8H4 278 aa2.32□□□□□ -2.04
CNOT3-210ENST00000618939 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
CNOT3-210ENST00000618939 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
CNOT3-210ENST00000618939 KRTAP5-11Q6L8G4 156 aa2.21□□□□□ -2.06
CNOT3-210ENST00000618939 MUC5BQ9HC84 5762 aaPredicted RBP2.18□□□□□ -2.06
CNOT3-210ENST00000618939 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
CNOT3-210ENST00000618939 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
CNOT3-210ENST00000618939 KRTAP5-7Q6L8G8 165 aa2.09□□□□□ -2.07
CNOT3-210ENST00000618939 KRTAP21-1Q3LI58 79 aa1.99□□□□□ -2.09
CNOT3-210ENST00000618939 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms