RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 KRTAP19-6Q3LI70 58 aa6.69□□□□□ -1.34
NEK3-208ENST00000618534 KRTAP4-3Q9BYR4 195 aa6.67□□□□□ -1.34
NEK3-208ENST00000618534 LOC100996750A0A140TA64 210 aa6.67□□□□□ -1.34
NEK3-208ENST00000618534 MT1GP13640 62 aa6.58□□□□□ -1.36
NEK3-208ENST00000618534 KRTAP9-2Q9BYQ4 174 aa6.54□□□□□ -1.36
NEK3-208ENST00000618534 FCGBPQ9Y6R7 5405 aaPredicted RBP6.53□□□□□ -1.36
NEK3-208ENST00000618534 MT1MQ8N339 61 aa6.52□□□□□ -1.37
NEK3-208ENST00000618534 KRTAP19-3Q7Z4W3 81 aa6.49□□□□□ -1.37
NEK3-208ENST00000618534 MUC12Q9UKN1 5478 aa6.48□□□□□ -1.37
NEK3-208ENST00000618534 CRCT1Q9UGL9 99 aa6.46□□□□□ -1.38
NEK3-208ENST00000618534 MACF1Q9UPN3 7388 aaKnown RBP6.29□□□□□ -1.4
NEK3-208ENST00000618534 KRTAP12-4P60329 112 aa6.28□□□□□ -1.4
NEK3-208ENST00000618534 LCE5AQ5TCM9 118 aa6.24□□□□□ -1.41
NEK3-208ENST00000618534 DSTQ03001 7570 aaKnown RBP6.2□□□□□ -1.42
NEK3-208ENST00000618534 SPRR2FQ96RM1 72 aa6.19□□□□□ -1.42
NEK3-208ENST00000618534 SYNE2Q8WXH0 6885 aaKnown RBP6.18□□□□□ -1.42
NEK3-208ENST00000618534 LCE3BQ5TA77 95 aa6.14□□□□□ -1.43
NEK3-208ENST00000618534 KRTAP9-6A0A140TA67 174 aa6.06□□□□□ -1.44
NEK3-208ENST00000618534 KRTAP4-9Q9BYQ8 210 aa6.06□□□□□ -1.44
NEK3-208ENST00000618534 KRTAP6-1Q3LI64 71 aa5.97□□□□□ -1.45
NEK3-208ENST00000618534 MT1AP04731 61 aa5.94□□□□□ -1.46
NEK3-208ENST00000618534 SYNE1Q8NF91 8797 aaKnown RBP5.87□□□□□ -1.47
NEK3-208ENST00000618534 MDN1Q9NU22 5596 aa5.86□□□□□ -1.47
NEK3-208ENST00000618534 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.83□□□□□ -1.48
NEK3-208ENST00000618534 LCE3DQ9BYE3 92 aa5.8□□□□□ -1.48
NEK3-208ENST00000618534 KRTAP5-9P26371 169 aa5.78□□□□□ -1.48
NEK3-208ENST00000618534 LCE3EQ5T5B0 92 aa5.74□□□□□ -1.49
NEK3-208ENST00000618534 KRTAP5-5Q701N2 237 aaPredicted RBP5.74□□□□□ -1.49
NEK3-208ENST00000618534 LCE1AQ5T7P2 110 aa5.73□□□□□ -1.49
NEK3-208ENST00000618534 KRTAP9-7A8MTY7 169 aa5.66□□□□□ -1.5
NEK3-208ENST00000618534 KRTAP6-3Q3LI67 103 aa5.64□□□□□ -1.51
NEK3-208ENST00000618534 SPRR2EP22531 72 aa5.6□□□□□ -1.51
NEK3-208ENST00000618534 SPRR2BP35325 72 aa5.6□□□□□ -1.51
NEK3-208ENST00000618534 SPRR2AP35326 72 aa5.6□□□□□ -1.51
NEK3-208ENST00000618534 PRM1P04553 51 aa5.59□□□□□ -1.51
NEK3-208ENST00000618534 KRTAP9-4Q9BYQ2 154 aa5.5□□□□□ -1.53
NEK3-208ENST00000618534 KRTAP6-2Q3LI66 62 aa5.39□□□□□ -1.55
NEK3-208ENST00000618534 SPRR2DP22532 72 aa5.38□□□□□ -1.55
NEK3-208ENST00000618534 NEBP20929 6669 aa5.37□□□□□ -1.55
NEK3-208ENST00000618534 MT3P25713 68 aa5.25□□□□□ -1.57
NEK3-208ENST00000618534 OBSCNQ5VST9 7968 aa5.19□□□□□ -1.58
NEK3-208ENST00000618534 KRTAP5-4Q6L8H1 288 aa4.93□□□□□ -1.62
NEK3-208ENST00000618534 KRTAP2-2Q9BYT5 123 aa4.92□□□□□ -1.62
NEK3-208ENST00000618534 KRTAP20-1Q3LI63 56 aa4.85□□□□□ -1.63
NEK3-208ENST00000618534 KRTAP4-6Q9BYQ5 205 aa4.78□□□□□ -1.64
NEK3-208ENST00000618534 MT4P47944 62 aa4.75□□□□□ -1.65
NEK3-208ENST00000618534 LCE4AQ5TA78 99 aa4.69□□□□□ -1.66
NEK3-208ENST00000618534 KRTAP20-2Q3LI61 65 aa4.65□□□□□ -1.66
NEK3-208ENST00000618534 KRTAP5-2Q701N4 177 aa4.65□□□□□ -1.66
NEK3-208ENST00000618534 HMCN1Q96RW7 5635 aa4.65□□□□□ -1.66
NEK3-208ENST00000618534 LCE1DQ5T752 114 aa4.62□□□□□ -1.67
NEK3-208ENST00000618534 MUC5ACP98088 5654 aa4.49□□□□□ -1.69
NEK3-208ENST00000618534 KRTAP5-3Q6L8H2 238 aa4.41□□□□□ -1.7
NEK3-208ENST00000618534 LCE1BQ5T7P3 118 aa4.25□□□□□ -1.73
NEK3-208ENST00000618534 KRTAP5-10Q6L8G5 202 aa4.24□□□□□ -1.73
NEK3-208ENST00000618534 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
NEK3-208ENST00000618534 KRTAP4-11Q9BYQ6 195 aa4.21□□□□□ -1.74
NEK3-208ENST00000618534 KRTAP5-1Q6L8H4 278 aa4.15□□□□□ -1.74
NEK3-208ENST00000618534 KRTAP4-2Q9BYR5 136 aa4.05□□□□□ -1.76
NEK3-208ENST00000618534 LCE1CQ5T751 118 aa4.01□□□□□ -1.77
NEK3-208ENST00000618534 AHNAK2Q8IVF2 5795 aa3.98□□□□□ -1.77
NEK3-208ENST00000618534 KRTAP21-2Q3LI59 83 aa3.84□□□□□ -1.8
NEK3-208ENST00000618534 KRTAP5-8O75690 187 aa3.79□□□□□ -1.8
NEK3-208ENST00000618534 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.79□□□□□ -1.8
NEK3-208ENST00000618534 GPR98Q8WXG9 6306 aa3.74□□□□□ -1.81
NEK3-208ENST00000618534 KRTAP5-7Q6L8G8 165 aa3.6□□□□□ -1.83
NEK3-208ENST00000618534 KRTAP4-12Q9BQ66 201 aa3.58□□□□□ -1.84
NEK3-208ENST00000618534 KRTAP4-4Q9BYR3 166 aa3.55□□□□□ -1.84
NEK3-208ENST00000618534 KRTAP21-1Q3LI58 79 aa3.51□□□□□ -1.85
NEK3-208ENST00000618534 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
NEK3-208ENST00000618534 KRTAP5-11Q6L8G4 156 aa3.43□□□□□ -1.86
NEK3-208ENST00000618534 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
NEK3-208ENST00000618534 MUC5BQ9HC84 5762 aaPredicted RBP3.43□□□□□ -1.86
NEK3-208ENST00000618534 MUC19Q7Z5P9 8384 aa3.36□□□□□ -1.87
NEK3-208ENST00000618534 AHNAKQ09666 5890 aaKnown RBP3□□□□□ -1.93
NEK3-208ENST00000618534 PHGR1C9JFL3 82 aa2.97□□□□□ -1.93
NEK3-208ENST00000618534 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 11.9 ms