RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 KRTAP19-6Q3LI70 58 aa4.02□□□□□ -1.77
COL5A1-208ENST00000618395 KRTAP19-2Q3LHN2 52 aa4.02□□□□□ -1.77
COL5A1-208ENST00000618395 KRTAP9-7A8MTY7 169 aa4□□□□□ -1.77
COL5A1-208ENST00000618395 KRTAP9-2Q9BYQ4 174 aa3.97□□□□□ -1.77
COL5A1-208ENST00000618395 KRTAP2-2Q9BYT5 123 aa3.96□□□□□ -1.78
COL5A1-208ENST00000618395 KMT2CQ8NEZ4 4911 aaKnown RBP3.95□□□□□ -1.78
COL5A1-208ENST00000618395 SYNE2Q8WXH0 6885 aaKnown RBP3.95□□□□□ -1.78
COL5A1-208ENST00000618395 RYR3Q15413 4870 aa3.91□□□□□ -1.78
COL5A1-208ENST00000618395 SYNE1Q8NF91 8797 aaKnown RBP3.89□□□□□ -1.79
COL5A1-208ENST00000618395 KRTAP19-7Q3SYF9 63 aa3.88□□□□□ -1.79
COL5A1-208ENST00000618395 HYDINQ4G0P3 5121 aa3.84□□□□□ -1.79
COL5A1-208ENST00000618395 LCE4AQ5TA78 99 aa3.84□□□□□ -1.8
COL5A1-208ENST00000618395 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
COL5A1-208ENST00000618395 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
COL5A1-208ENST00000618395 LCE1EQ5T753 118 aa3.82□□□□□ -1.8
COL5A1-208ENST00000618395 LCE1FQ5T754 118 aa3.82□□□□□ -1.8
COL5A1-208ENST00000618395 LCE1AQ5T7P2 110 aa3.82□□□□□ -1.8
COL5A1-208ENST00000618395 KRTAP6-1Q3LI64 71 aa3.77□□□□□ -1.81
COL5A1-208ENST00000618395 KRTAP20-1Q3LI63 56 aa3.76□□□□□ -1.81
COL5A1-208ENST00000618395 KRTAP9-4Q9BYQ2 154 aa3.74□□□□□ -1.81
COL5A1-208ENST00000618395 PCLOQ9Y6V0 5065 aa3.68□□□□□ -1.82
COL5A1-208ENST00000618395 KRTAP9-6A0A140TA67 174 aa3.67□□□□□ -1.82
COL5A1-208ENST00000618395 BIRC6Q9NR09 4857 aa3.66□□□□□ -1.82
COL5A1-208ENST00000618395 HMCN2Q8NDA2 5059 aa3.62□□□□□ -1.83
COL5A1-208ENST00000618395 KRTAP4-11Q9BYQ6 195 aa3.57□□□□□ -1.84
COL5A1-208ENST00000618395 RYR2Q92736 4967 aa3.57□□□□□ -1.84
COL5A1-208ENST00000618395 LCE2AQ5TA79 106 aaPredicted RBP3.53□□□□□ -1.84
COL5A1-208ENST00000618395 HERC2O95714 4834 aa3.52□□□□□ -1.85
COL5A1-208ENST00000618395 KRTAP6-3Q3LI67 103 aa3.51□□□□□ -1.85
COL5A1-208ENST00000618395 HERC1Q15751 4861 aa3.43□□□□□ -1.86
COL5A1-208ENST00000618395 KIAA1109Q2LD37 5005 aa3.4□□□□□ -1.86
COL5A1-208ENST00000618395 KRTAP9-9Q9BYP9 154 aa3.39□□□□□ -1.87
COL5A1-208ENST00000618395 MUC2Q02817 5179 aa3.31□□□□□ -1.88
COL5A1-208ENST00000618395 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.31□□□□□ -1.88
COL5A1-208ENST00000618395 FSIP2Q5CZC0 6907 aa3.29□□□□□ -1.88
COL5A1-208ENST00000618395 OBSCNQ5VST9 7968 aa3.29□□□□□ -1.88
COL5A1-208ENST00000618395 KMT2DO14686 5537 aa3.2□□□□□ -1.9
COL5A1-208ENST00000618395 UBR4Q5T4S7 5183 aa3.09□□□□□ -1.91
COL5A1-208ENST00000618395 KRTAP20-2Q3LI61 65 aa3.09□□□□□ -1.91
COL5A1-208ENST00000618395 DSTQ03001 7570 aaKnown RBP3.06□□□□□ -1.92
COL5A1-208ENST00000618395 EPPK1P58107 5090 aaKnown RBP3.05□□□□□ -1.92
COL5A1-208ENST00000618395 KRTAP5-5Q701N2 237 aaPredicted RBP3.02□□□□□ -1.93
COL5A1-208ENST00000618395 RNF213Q63HN8 5207 aa2.97□□□□□ -1.93
COL5A1-208ENST00000618395 FCGBPQ9Y6R7 5405 aaPredicted RBP2.96□□□□□ -1.94
COL5A1-208ENST00000618395 ABCA13Q86UQ4 5058 aa2.96□□□□□ -1.94
COL5A1-208ENST00000618395 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
COL5A1-208ENST00000618395 KRTAP5-9P26371 169 aa2.93□□□□□ -1.94
COL5A1-208ENST00000618395 FAT4Q6V0I7 4981 aa2.93□□□□□ -1.94
COL5A1-208ENST00000618395 MUC19Q7Z5P9 8384 aa2.87□□□□□ -1.95
COL5A1-208ENST00000618395 KRTAP4-6Q9BYQ5 205 aa2.87□□□□□ -1.95
COL5A1-208ENST00000618395 KRTAP4-12Q9BQ66 201 aa2.75□□□□□ -1.97
COL5A1-208ENST00000618395 KRTAP4-2Q9BYR5 136 aa2.75□□□□□ -1.97
COL5A1-208ENST00000618395 NEBP20929 6669 aa2.73□□□□□ -1.97
COL5A1-208ENST00000618395 KRTAP5-4Q6L8H1 288 aa2.69□□□□□ -1.98
COL5A1-208ENST00000618395 MACF1Q9UPN3 7388 aaKnown RBP2.58□□□□□ -2
COL5A1-208ENST00000618395 MUC12Q9UKN1 5478 aa2.53□□□□□ -2
COL5A1-208ENST00000618395 MDN1Q9NU22 5596 aa2.46□□□□□ -2.01
COL5A1-208ENST00000618395 USH2AO75445 5202 aa2.46□□□□□ -2.02
COL5A1-208ENST00000618395 SSPOA2VEC9 5147 aa2.42□□□□□ -2.02
COL5A1-208ENST00000618395 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
COL5A1-208ENST00000618395 KRTAP5-3Q6L8H2 238 aa2.32□□□□□ -2.04
COL5A1-208ENST00000618395 KRTAP5-2Q701N4 177 aa2.27□□□□□ -2.05
COL5A1-208ENST00000618395 MUC5ACP98088 5654 aa2.27□□□□□ -2.05
COL5A1-208ENST00000618395 GPR98Q8WXG9 6306 aa2.22□□□□□ -2.05
COL5A1-208ENST00000618395 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
COL5A1-208ENST00000618395 KRTAP21-1Q3LI58 79 aa2.06□□□□□ -2.08
COL5A1-208ENST00000618395 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
COL5A1-208ENST00000618395 KRTAP5-8O75690 187 aa2□□□□□ -2.09
COL5A1-208ENST00000618395 HMCN1Q96RW7 5635 aa1.99□□□□□ -2.09
COL5A1-208ENST00000618395 KRTAP5-1Q6L8H4 278 aa1.91□□□□□ -2.1
COL5A1-208ENST00000618395 KRTAP5-11Q6L8G4 156 aa1.88□□□□□ -2.11
COL5A1-208ENST00000618395 AHNAK2Q8IVF2 5795 aa1.81□□□□□ -2.12
COL5A1-208ENST00000618395 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
COL5A1-208ENST00000618395 AHNAKQ09666 5890 aaKnown RBP1.75□□□□□ -2.13
COL5A1-208ENST00000618395 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.67□□□□□ -2.14
COL5A1-208ENST00000618395 MUC16Q8WXI7 14507 aa1.59□□□□□ -2.16
COL5A1-208ENST00000618395 KRTAP5-7Q6L8G8 165 aa1.51□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 52.3 ms