RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LCE3DQ9BYE3 92 aa4.58□□□□□ -1.68
CPSF1-212ENST00000616140 MT1EP04732 61 aa4.56□□□□□ -1.68
CPSF1-212ENST00000616140 LCE2DQ5TA82 110 aaPredicted RBP4.55□□□□□ -1.68
CPSF1-212ENST00000616140 OBSCNQ5VST9 7968 aa4.55□□□□□ -1.68
CPSF1-212ENST00000616140 FAT4Q6V0I7 4981 aa4.53□□□□□ -1.68
CPSF1-212ENST00000616140 LCE2AQ5TA79 106 aaPredicted RBP4.51□□□□□ -1.69
CPSF1-212ENST00000616140 LCE3EQ5T5B0 92 aa4.5□□□□□ -1.69
CPSF1-212ENST00000616140 HMCN2Q8NDA2 5059 aa4.48□□□□□ -1.69
CPSF1-212ENST00000616140 KRTAP9-7A8MTY7 169 aa4.46□□□□□ -1.7
CPSF1-212ENST00000616140 MACF1Q9UPN3 7388 aaKnown RBP4.42□□□□□ -1.7
CPSF1-212ENST00000616140 MT1MQ8N339 61 aa4.4□□□□□ -1.71
CPSF1-212ENST00000616140 LOC100996750A0A140TA64 210 aa4.36□□□□□ -1.71
CPSF1-212ENST00000616140 KRTAP4-3Q9BYR4 195 aa4.36□□□□□ -1.71
CPSF1-212ENST00000616140 KRTAP19-7Q3SYF9 63 aa4.34□□□□□ -1.72
CPSF1-212ENST00000616140 KRTAP19-6Q3LI70 58 aa4.33□□□□□ -1.72
CPSF1-212ENST00000616140 SYNE2Q8WXH0 6885 aaKnown RBP4.33□□□□□ -1.72
CPSF1-212ENST00000616140 KRTAP20-1Q3LI63 56 aa4.3□□□□□ -1.72
CPSF1-212ENST00000616140 GPR98Q8WXG9 6306 aa4.24□□□□□ -1.73
CPSF1-212ENST00000616140 FCGBPQ9Y6R7 5405 aaPredicted RBP4.23□□□□□ -1.73
CPSF1-212ENST00000616140 MT3P25713 68 aa4.21□□□□□ -1.74
CPSF1-212ENST00000616140 MT4P47944 62 aa4.2□□□□□ -1.74
CPSF1-212ENST00000616140 PRM1P04553 51 aa4.17□□□□□ -1.74
CPSF1-212ENST00000616140 DSTQ03001 7570 aaKnown RBP4.15□□□□□ -1.75
CPSF1-212ENST00000616140 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.13□□□□□ -1.75
CPSF1-212ENST00000616140 KRTAP2-3P0C7H8 128 aa4.12□□□□□ -1.75
CPSF1-212ENST00000616140 KRTAP2-4Q9BYR9 128 aa4.12□□□□□ -1.75
CPSF1-212ENST00000616140 KRTAP2-1Q9BYU5 128 aa4.12□□□□□ -1.75
CPSF1-212ENST00000616140 KRTAP4-9Q9BYQ8 210 aa4.1□□□□□ -1.75
CPSF1-212ENST00000616140 KRTAP9-6A8MVA2 160 aa4.09□□□□□ -1.75
CPSF1-212ENST00000616140 USH2AO75445 5202 aa4.08□□□□□ -1.76
CPSF1-212ENST00000616140 MT1AP04731 61 aa4.06□□□□□ -1.76
CPSF1-212ENST00000616140 KRTAP6-3Q3LI67 103 aa4.05□□□□□ -1.76
CPSF1-212ENST00000616140 KMT2DO14686 5537 aa4□□□□□ -1.77
CPSF1-212ENST00000616140 LCE1DQ5T752 114 aa3.98□□□□□ -1.77
CPSF1-212ENST00000616140 LCE1BQ5T7P3 118 aa3.98□□□□□ -1.77
CPSF1-212ENST00000616140 KRTAP2-2Q9BYT5 123 aa3.92□□□□□ -1.78
CPSF1-212ENST00000616140 KRTAP6-1Q3LI64 71 aa3.88□□□□□ -1.79
CPSF1-212ENST00000616140 LCE5AQ5TCM9 118 aa3.85□□□□□ -1.79
CPSF1-212ENST00000616140 LCE1AQ5T7P2 110 aa3.81□□□□□ -1.8
CPSF1-212ENST00000616140 KRTAP6-2Q3LI66 62 aa3.78□□□□□ -1.8
CPSF1-212ENST00000616140 MDN1Q9NU22 5596 aa3.75□□□□□ -1.81
CPSF1-212ENST00000616140 KRTAP9-4Q9BYQ2 154 aa3.7□□□□□ -1.82
CPSF1-212ENST00000616140 MUC12Q9UKN1 5478 aa3.7□□□□□ -1.82
CPSF1-212ENST00000616140 NEBP20929 6669 aa3.68□□□□□ -1.82
CPSF1-212ENST00000616140 MUC19Q7Z5P9 8384 aa3.67□□□□□ -1.82
CPSF1-212ENST00000616140 LCE4AQ5TA78 99 aa3.64□□□□□ -1.83
CPSF1-212ENST00000616140 LCE1EQ5T753 118 aa3.57□□□□□ -1.84
CPSF1-212ENST00000616140 SSPOA2VEC9 5147 aa3.57□□□□□ -1.84
CPSF1-212ENST00000616140 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
CPSF1-212ENST00000616140 KRTAP9-9Q9BYP9 154 aa3.37□□□□□ -1.87
CPSF1-212ENST00000616140 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
CPSF1-212ENST00000616140 KRTAP5-9P26371 169 aa3.28□□□□□ -1.88
CPSF1-212ENST00000616140 KRTAP4-6Q9BYQ5 205 aa3.19□□□□□ -1.9
CPSF1-212ENST00000616140 KRTAP5-5Q701N2 237 aaPredicted RBP3.19□□□□□ -1.9
CPSF1-212ENST00000616140 KRTAP4-11Q9BYQ6 195 aa3.11□□□□□ -1.91
CPSF1-212ENST00000616140 KRTAP20-2Q3LI61 65 aa3.09□□□□□ -1.91
CPSF1-212ENST00000616140 AHNAK2Q8IVF2 5795 aa3□□□□□ -1.93
CPSF1-212ENST00000616140 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
CPSF1-212ENST00000616140 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
CPSF1-212ENST00000616140 KRTAP4-4Q9BYR3 166 aa2.86□□□□□ -1.95
CPSF1-212ENST00000616140 KRTAP5-3Q6L8H2 238 aa2.81□□□□□ -1.96
CPSF1-212ENST00000616140 KRTAP4-12Q9BQ66 201 aa2.78□□□□□ -1.96
CPSF1-212ENST00000616140 KRTAP4-2Q9BYR5 136 aa2.78□□□□□ -1.96
CPSF1-212ENST00000616140 KRTAP5-4Q6L8H1 288 aa2.77□□□□□ -1.97
CPSF1-212ENST00000616140 KRTAP5-8O75690 187 aa2.46□□□□□ -2.02
CPSF1-212ENST00000616140 AHNAKQ09666 5890 aaKnown RBP2.45□□□□□ -2.02
CPSF1-212ENST00000616140 KRTAP5-10Q6L8G5 202 aa2.39□□□□□ -2.03
CPSF1-212ENST00000616140 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
CPSF1-212ENST00000616140 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
CPSF1-212ENST00000616140 MUC5BQ9HC84 5762 aaPredicted RBP2.31□□□□□ -2.04
CPSF1-212ENST00000616140 KRTAP5-1Q6L8H4 278 aa2.08□□□□□ -2.08
CPSF1-212ENST00000616140 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
CPSF1-212ENST00000616140 KRTAP5-11Q6L8G4 156 aa2.07□□□□□ -2.08
CPSF1-212ENST00000616140 KRTAP21-2Q3LI59 83 aa2.04□□□□□ -2.08
CPSF1-212ENST00000616140 KRTAP21-1Q3LI58 79 aa2.03□□□□□ -2.08
CPSF1-212ENST00000616140 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.85□□□□□ -2.11
CPSF1-212ENST00000616140 MUC16Q8WXI7 14507 aa1.29□□□□□ -2.2
Retrieved 77 of 20,778 RNA–protein pairs in 64.1 ms