RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FCGBPQ9Y6R7 5405 aaPredicted RBP3.59□□□□□ -1.83
LIG1-220ENST00000601091 KRTAP12-4P60329 112 aa3.57□□□□□ -1.84
LIG1-220ENST00000601091 KRTAP9-6A8MVA2 160 aa3.56□□□□□ -1.84
LIG1-220ENST00000601091 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
LIG1-220ENST00000601091 LCE5AQ5TCM9 118 aa3.51□□□□□ -1.85
LIG1-220ENST00000601091 KRTAP6-3Q3LI67 103 aa3.5□□□□□ -1.85
LIG1-220ENST00000601091 MT1LQ93083 61 aa3.48□□□□□ -1.85
LIG1-220ENST00000601091 LCE1DQ5T752 114 aa3.48□□□□□ -1.85
LIG1-220ENST00000601091 MT1EP04732 61 aa3.47□□□□□ -1.85
LIG1-220ENST00000601091 KRTAP19-7Q3SYF9 63 aa3.46□□□□□ -1.86
LIG1-220ENST00000601091 SPRR2FQ96RM1 72 aa3.44□□□□□ -1.86
LIG1-220ENST00000601091 MUC12Q9UKN1 5478 aa3.42□□□□□ -1.86
LIG1-220ENST00000601091 LOC100996750A0A140TA64 210 aa3.41□□□□□ -1.86
LIG1-220ENST00000601091 MT1GP13640 62 aa3.41□□□□□ -1.86
LIG1-220ENST00000601091 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
LIG1-220ENST00000601091 KRTAP9-6A0A140TA67 174 aa3.37□□□□□ -1.87
LIG1-220ENST00000601091 KRTAP19-6Q3LI70 58 aa3.36□□□□□ -1.87
LIG1-220ENST00000601091 MUC19Q7Z5P9 8384 aa3.35□□□□□ -1.87
LIG1-220ENST00000601091 KRTAP19-3Q7Z4W3 81 aa3.34□□□□□ -1.87
LIG1-220ENST00000601091 LCE3EQ5T5B0 92 aa3.34□□□□□ -1.88
LIG1-220ENST00000601091 KRTAP2-3P0C7H8 128 aa3.33□□□□□ -1.88
LIG1-220ENST00000601091 KRTAP2-4Q9BYR9 128 aa3.33□□□□□ -1.88
LIG1-220ENST00000601091 KRTAP2-1Q9BYU5 128 aa3.33□□□□□ -1.88
LIG1-220ENST00000601091 SYNE2Q8WXH0 6885 aaKnown RBP3.3□□□□□ -1.88
LIG1-220ENST00000601091 MT1MQ8N339 61 aa3.28□□□□□ -1.88
LIG1-220ENST00000601091 PRM1P04553 51 aa3.27□□□□□ -1.89
LIG1-220ENST00000601091 LCE3BQ5TA77 95 aa3.26□□□□□ -1.89
LIG1-220ENST00000601091 SSPOA2VEC9 5147 aa3.25□□□□□ -1.89
LIG1-220ENST00000601091 KRTAP9-4Q9BYQ2 154 aa3.23□□□□□ -1.89
LIG1-220ENST00000601091 KRTAP4-9Q9BYQ8 210 aa3.23□□□□□ -1.89
LIG1-220ENST00000601091 LCE3DQ9BYE3 92 aa3.22□□□□□ -1.89
LIG1-220ENST00000601091 SPRR2EP22531 72 aa3.13□□□□□ -1.91
LIG1-220ENST00000601091 SPRR2BP35325 72 aa3.13□□□□□ -1.91
LIG1-220ENST00000601091 SPRR2AP35326 72 aa3.13□□□□□ -1.91
LIG1-220ENST00000601091 KRTAP9-7A8MTY7 169 aa3.08□□□□□ -1.92
LIG1-220ENST00000601091 MT3P25713 68 aa3.06□□□□□ -1.92
LIG1-220ENST00000601091 SPRR2DP22532 72 aa3□□□□□ -1.93
LIG1-220ENST00000601091 MT1AP04731 61 aa2.99□□□□□ -1.93
LIG1-220ENST00000601091 LCE4AQ5TA78 99 aa2.98□□□□□ -1.93
LIG1-220ENST00000601091 MACF1Q9UPN3 7388 aaKnown RBP2.98□□□□□ -1.93
LIG1-220ENST00000601091 MDN1Q9NU22 5596 aa2.95□□□□□ -1.94
LIG1-220ENST00000601091 KRTAP9-2Q9BYQ4 174 aa2.95□□□□□ -1.94
LIG1-220ENST00000601091 KRTAP6-1Q3LI64 71 aa2.94□□□□□ -1.94
LIG1-220ENST00000601091 KRTAP9-9Q9BYP9 154 aa2.91□□□□□ -1.94
LIG1-220ENST00000601091 KRTAP6-2Q3LI66 62 aa2.74□□□□□ -1.97
LIG1-220ENST00000601091 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
LIG1-220ENST00000601091 KRTAP5-9P26371 169 aa2.72□□□□□ -1.97
LIG1-220ENST00000601091 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
LIG1-220ENST00000601091 MT4P47944 62 aa2.66□□□□□ -1.98
LIG1-220ENST00000601091 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.61□□□□□ -1.99
LIG1-220ENST00000601091 LCE1BQ5T7P3 118 aa2.48□□□□□ -2.01
LIG1-220ENST00000601091 KRTAP4-11Q9BYQ6 195 aa2.42□□□□□ -2.02
LIG1-220ENST00000601091 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
LIG1-220ENST00000601091 KRTAP4-6Q9BYQ5 205 aa2.4□□□□□ -2.03
LIG1-220ENST00000601091 KRTAP20-1Q3LI63 56 aa2.38□□□□□ -2.03
LIG1-220ENST00000601091 NEBP20929 6669 aa2.37□□□□□ -2.03
LIG1-220ENST00000601091 KRTAP20-2Q3LI61 65 aa2.34□□□□□ -2.03
LIG1-220ENST00000601091 KRTAP5-4Q6L8H1 288 aa2.29□□□□□ -2.04
LIG1-220ENST00000601091 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
LIG1-220ENST00000601091 HMCN1Q96RW7 5635 aa2.13□□□□□ -2.07
LIG1-220ENST00000601091 KRTAP5-2Q701N4 177 aa2.11□□□□□ -2.07
LIG1-220ENST00000601091 KRTAP5-3Q6L8H2 238 aa2.03□□□□□ -2.08
LIG1-220ENST00000601091 KRTAP4-4Q9BYR3 166 aa2.01□□□□□ -2.09
LIG1-220ENST00000601091 KRTAP5-10Q6L8G5 202 aa1.97□□□□□ -2.09
LIG1-220ENST00000601091 KRTAP4-2Q9BYR5 136 aa1.89□□□□□ -2.11
LIG1-220ENST00000601091 KRTAP21-1Q3LI58 79 aa1.86□□□□□ -2.11
LIG1-220ENST00000601091 AHNAK2Q8IVF2 5795 aa1.85□□□□□ -2.11
LIG1-220ENST00000601091 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
LIG1-220ENST00000601091 KRTAP5-1Q6L8H4 278 aa1.81□□□□□ -2.12
LIG1-220ENST00000601091 KRTAP4-12Q9BQ66 201 aa1.81□□□□□ -2.12
LIG1-220ENST00000601091 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
LIG1-220ENST00000601091 KRTAP5-8O75690 187 aa1.73□□□□□ -2.13
LIG1-220ENST00000601091 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.72□□□□□ -2.13
LIG1-220ENST00000601091 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
LIG1-220ENST00000601091 KRTAP5-11Q6L8G4 156 aa1.67□□□□□ -2.14
LIG1-220ENST00000601091 KRTAP5-7Q6L8G8 165 aa1.58□□□□□ -2.16
LIG1-220ENST00000601091 PHGR1C9JFL3 82 aa1.42□□□□□ -2.18
LIG1-220ENST00000601091 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 233.5 ms