RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 LCE1DQ5T752 114 aa6.22□□□□□ -1.41
UPF1-207ENST00000599848 LCE1AQ5T7P2 110 aa6.2□□□□□ -1.42
UPF1-207ENST00000599848 KRTAP6-3Q3LI67 103 aa6.18□□□□□ -1.42
UPF1-207ENST00000599848 KRTAP9-7A8MTY7 169 aa6.17□□□□□ -1.42
UPF1-207ENST00000599848 KRTAP2-3P0C7H8 128 aa6.16□□□□□ -1.42
UPF1-207ENST00000599848 KRTAP2-4Q9BYR9 128 aa6.16□□□□□ -1.42
UPF1-207ENST00000599848 MT1AP04731 61 aa6.15□□□□□ -1.42
UPF1-207ENST00000599848 LCE2AQ5TA79 106 aaPredicted RBP6.14□□□□□ -1.43
UPF1-207ENST00000599848 KRTAP4-7Q9BYR0 210 aa6.14□□□□□ -1.43
UPF1-207ENST00000599848 TNXBP22105 4242 aa6.07□□□□□ -1.44
UPF1-207ENST00000599848 LCE4AQ5TA78 99 aa6.02□□□□□ -1.45
UPF1-207ENST00000599848 MUC17Q685J3 4493 aa6.01□□□□□ -1.45
UPF1-207ENST00000599848 ABCA13Q86UQ4 5058 aa6.01□□□□□ -1.45
UPF1-207ENST00000599848 LCE5AQ5TCM9 118 aa5.99□□□□□ -1.45
UPF1-207ENST00000599848 PRM1P04553 51 aa5.94□□□□□ -1.46
UPF1-207ENST00000599848 FLGP20930 4061 aaPredicted RBP5.94□□□□□ -1.46
UPF1-207ENST00000599848 KRTAP2-2Q9BYT5 123 aa5.91□□□□□ -1.46
UPF1-207ENST00000599848 KRTAP2-1Q9BYU5 128 aa5.91□□□□□ -1.46
UPF1-207ENST00000599848 SYNE1Q8NF91 8797 aaKnown RBP5.85□□□□□ -1.47
UPF1-207ENST00000599848 KRTAP19-7Q3SYF9 63 aa5.83□□□□□ -1.48
UPF1-207ENST00000599848 LOC100996750A0A140TA64 210 aa5.82□□□□□ -1.48
UPF1-207ENST00000599848 FSIP2Q5CZC0 6907 aa5.81□□□□□ -1.48
UPF1-207ENST00000599848 KRTAP4-3Q9BYR4 195 aa5.79□□□□□ -1.48
UPF1-207ENST00000599848 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.79□□□□□ -1.48
UPF1-207ENST00000599848 UBR4Q5T4S7 5183 aa5.78□□□□□ -1.48
UPF1-207ENST00000599848 FAT4Q6V0I7 4981 aa5.76□□□□□ -1.49
UPF1-207ENST00000599848 RNF213Q63HN8 5207 aa5.7□□□□□ -1.5
UPF1-207ENST00000599848 SYNE2Q8WXH0 6885 aaKnown RBP5.68□□□□□ -1.5
UPF1-207ENST00000599848 HMCN2Q8NDA2 5059 aa5.62□□□□□ -1.51
UPF1-207ENST00000599848 KRTAP9-4Q9BYQ2 154 aa5.6□□□□□ -1.51
UPF1-207ENST00000599848 LCE1CQ5T751 118 aa5.52□□□□□ -1.53
UPF1-207ENST00000599848 LCE1EQ5T753 118 aa5.52□□□□□ -1.53
UPF1-207ENST00000599848 LCE1FQ5T754 118 aa5.52□□□□□ -1.53
UPF1-207ENST00000599848 KRTAP6-2Q3LI66 62 aa5.5□□□□□ -1.53
UPF1-207ENST00000599848 MUC2Q02817 5179 aa5.46□□□□□ -1.54
UPF1-207ENST00000599848 KRTAP4-9Q9BYQ8 210 aa5.44□□□□□ -1.54
UPF1-207ENST00000599848 KRTAP6-1Q3LI64 71 aa5.4□□□□□ -1.54
UPF1-207ENST00000599848 KRTAP9-9Q9BYP9 154 aa5.34□□□□□ -1.55
UPF1-207ENST00000599848 OBSCNQ5VST9 7968 aa5.29□□□□□ -1.56
UPF1-207ENST00000599848 KRTAP9-6A8MVA2 160 aa5.08□□□□□ -1.6
UPF1-207ENST00000599848 FCGBPQ9Y6R7 5405 aaPredicted RBP4.97□□□□□ -1.61
UPF1-207ENST00000599848 GPR98Q8WXG9 6306 aa4.97□□□□□ -1.61
UPF1-207ENST00000599848 USH2AO75445 5202 aa4.92□□□□□ -1.62
UPF1-207ENST00000599848 KRTAP5-9P26371 169 aa4.92□□□□□ -1.62
UPF1-207ENST00000599848 NEBP20929 6669 aa4.9□□□□□ -1.63
UPF1-207ENST00000599848 DSTQ03001 7570 aaKnown RBP4.85□□□□□ -1.63
UPF1-207ENST00000599848 KMT2DO14686 5537 aa4.8□□□□□ -1.64
UPF1-207ENST00000599848 MACF1Q9UPN3 7388 aaKnown RBP4.79□□□□□ -1.64
UPF1-207ENST00000599848 KRTAP20-2Q3LI61 65 aa4.67□□□□□ -1.66
UPF1-207ENST00000599848 MUC12Q9UKN1 5478 aa4.54□□□□□ -1.68
UPF1-207ENST00000599848 SSPOA2VEC9 5147 aa4.53□□□□□ -1.68
UPF1-207ENST00000599848 KRTAP4-6Q9BYQ5 205 aa4.49□□□□□ -1.69
UPF1-207ENST00000599848 KRTAP5-4Q6L8H1 288 aa4.49□□□□□ -1.69
UPF1-207ENST00000599848 MDN1Q9NU22 5596 aa4.4□□□□□ -1.71
UPF1-207ENST00000599848 MUC19Q7Z5P9 8384 aa4.32□□□□□ -1.72
UPF1-207ENST00000599848 KRTAP4-11Q9BYQ6 195 aa4.29□□□□□ -1.72
UPF1-207ENST00000599848 KRTAP4-12Q9BQ66 201 aa4.09□□□□□ -1.75
UPF1-207ENST00000599848 KRTAP4-2Q9BYR5 136 aa4.09□□□□□ -1.75
UPF1-207ENST00000599848 AHNAK2Q8IVF2 5795 aa4.06□□□□□ -1.76
UPF1-207ENST00000599848 KRTAP4-4Q9BYR3 166 aa4□□□□□ -1.77
UPF1-207ENST00000599848 KRTAP5-3Q6L8H2 238 aa3.94□□□□□ -1.78
UPF1-207ENST00000599848 KRTAP5-5Q701N2 237 aaPredicted RBP3.89□□□□□ -1.79
UPF1-207ENST00000599848 HMCN1Q96RW7 5635 aa3.75□□□□□ -1.81
UPF1-207ENST00000599848 MUC5ACP98088 5654 aa3.74□□□□□ -1.81
UPF1-207ENST00000599848 KRTAP5-8O75690 187 aa3.46□□□□□ -1.86
UPF1-207ENST00000599848 PHGR1C9JFL3 82 aa3.44□□□□□ -1.86
UPF1-207ENST00000599848 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
UPF1-207ENST00000599848 MUC5BQ9HC84 5762 aaPredicted RBP3.17□□□□□ -1.9
UPF1-207ENST00000599848 AHNAKQ09666 5890 aaKnown RBP3.14□□□□□ -1.91
UPF1-207ENST00000599848 KRTAP5-11Q6L8G4 156 aa3.11□□□□□ -1.91
UPF1-207ENST00000599848 KRTAP5-10Q6L8G5 202 aa3.08□□□□□ -1.92
UPF1-207ENST00000599848 KRTAP5-1Q6L8H4 278 aa2.76□□□□□ -1.97
UPF1-207ENST00000599848 KRTAP5-7Q6L8G8 165 aa2.71□□□□□ -1.98
UPF1-207ENST00000599848 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
UPF1-207ENST00000599848 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
UPF1-207ENST00000599848 KRTAP21-2Q3LI59 83 aa2.6□□□□□ -1.99
UPF1-207ENST00000599848 MUC16Q8WXI7 14507 aa1.88□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 52.5 ms