RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 PP632Q6XCG6 107 aa5.54□□□□□ -1.52
TRIM28-207ENST00000597136 MT1EP04732 61 aa5.53□□□□□ -1.52
TRIM28-207ENST00000597136 KRTAP20-1Q3LI63 56 aa5.52□□□□□ -1.53
TRIM28-207ENST00000597136 KTN1-AS1Q86SY8 53 aa5.5□□□□□ -1.53
TRIM28-207ENST00000597136 H3BS24 57 aa5.49□□□□□ -1.53
TRIM28-207ENST00000597136 SPRR2DP22532 72 aa5.49□□□□□ -1.53
TRIM28-207ENST00000597136 PRAC1Q96KF2 57 aa5.48□□□□□ -1.53
TRIM28-207ENST00000597136 KRTAP12-3P60328 96 aa5.46□□□□□ -1.53
TRIM28-207ENST00000597136 KRTAP2-3P0C7H8 128 aa5.46□□□□□ -1.54
TRIM28-207ENST00000597136 KRTAP2-4Q9BYR9 128 aa5.46□□□□□ -1.54
TRIM28-207ENST00000597136 KRTAP19-3Q7Z4W3 81 aa5.42□□□□□ -1.54
TRIM28-207ENST00000597136 LCE5AQ5TCM9 118 aa5.41□□□□□ -1.54
TRIM28-207ENST00000597136 MT1LQ93083 61 aa5.33□□□□□ -1.56
TRIM28-207ENST00000597136 LCE3BQ5TA77 95 aa5.33□□□□□ -1.56
TRIM28-207ENST00000597136 MT1GP13640 62 aa5.32□□□□□ -1.56
TRIM28-207ENST00000597136 DSTQ03001 7570 aaKnown RBP5.31□□□□□ -1.56
TRIM28-207ENST00000597136 KRTAP2-2Q9BYT5 123 aa5.29□□□□□ -1.56
TRIM28-207ENST00000597136 KRTAP2-1Q9BYU5 128 aa5.29□□□□□ -1.56
TRIM28-207ENST00000597136 KRTAP15-1Q3LI76 137 aa5.29□□□□□ -1.56
TRIM28-207ENST00000597136 MT1MQ8N339 61 aa5.25□□□□□ -1.57
TRIM28-207ENST00000597136 KRTAP4-3Q9BYR4 195 aa5.19□□□□□ -1.58
TRIM28-207ENST00000597136 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
TRIM28-207ENST00000597136 KRTAP4-7Q9BYR0 210 aa5.16□□□□□ -1.58
TRIM28-207ENST00000597136 A0A0A0MQY5 61 aa5.11□□□□□ -1.59
TRIM28-207ENST00000597136 LCE3CQ5T5A8 94 aa5.09□□□□□ -1.59
TRIM28-207ENST00000597136 KRTAP4-9Q9BYQ8 210 aa4.93□□□□□ -1.62
TRIM28-207ENST00000597136 LOC100996750A0A140TA64 210 aa4.87□□□□□ -1.63
TRIM28-207ENST00000597136 LCE4AQ5TA78 99 aa4.84□□□□□ -1.63
TRIM28-207ENST00000597136 KRTAP5-4Q6L8H1 288 aa4.83□□□□□ -1.64
TRIM28-207ENST00000597136 LCE1DQ5T752 114 aa4.82□□□□□ -1.64
TRIM28-207ENST00000597136 KRTAP9-6A8MVA2 160 aa4.81□□□□□ -1.64
TRIM28-207ENST00000597136 MT4P47944 62 aa4.81□□□□□ -1.64
TRIM28-207ENST00000597136 SPRR5A0A1B0GTR4 108 aa4.79□□□□□ -1.64
TRIM28-207ENST00000597136 KRTAP5-5Q701N2 237 aaPredicted RBP4.78□□□□□ -1.64
TRIM28-207ENST00000597136 KRTAP4-6Q9BYQ5 205 aa4.74□□□□□ -1.65
TRIM28-207ENST00000597136 HMCN1Q96RW7 5635 aa4.71□□□□□ -1.65
TRIM28-207ENST00000597136 SYNE1Q8NF91 8797 aaKnown RBP4.65□□□□□ -1.67
TRIM28-207ENST00000597136 KRTAP12-4P60329 112 aa4.55□□□□□ -1.68
TRIM28-207ENST00000597136 KRTAP20-2Q3LI61 65 aa4.55□□□□□ -1.68
TRIM28-207ENST00000597136 MT1AP04731 61 aa4.53□□□□□ -1.69
TRIM28-207ENST00000597136 KRTAP6-1Q3LI64 71 aa4.53□□□□□ -1.69
TRIM28-207ENST00000597136 LUZP6Q538Z0 58 aa4.5□□□□□ -1.69
TRIM28-207ENST00000597136 AHNAK2Q8IVF2 5795 aa4.47□□□□□ -1.69
TRIM28-207ENST00000597136 GPR98Q8WXG9 6306 aa4.46□□□□□ -1.7
TRIM28-207ENST00000597136 KRTAP5-3Q6L8H2 238 aa4.42□□□□□ -1.7
TRIM28-207ENST00000597136 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
TRIM28-207ENST00000597136 KRTAP5-10Q6L8G5 202 aa4.31□□□□□ -1.72
TRIM28-207ENST00000597136 KRTAP5-2Q701N4 177 aa4.28□□□□□ -1.72
TRIM28-207ENST00000597136 KRTAP6-2Q3LI66 62 aa4.27□□□□□ -1.73
TRIM28-207ENST00000597136 NDUFAF8A1L188 74 aa4.23□□□□□ -1.73
TRIM28-207ENST00000597136 MT3P25713 68 aa4.11□□□□□ -1.75
TRIM28-207ENST00000597136 KRTAP5-7Q6L8G8 165 aa4.1□□□□□ -1.75
TRIM28-207ENST00000597136 OBSCNQ5VST9 7968 aa4.09□□□□□ -1.75
TRIM28-207ENST00000597136 KRTAP4-11Q9BYQ6 195 aa4.08□□□□□ -1.76
TRIM28-207ENST00000597136 KRTAP5-8O75690 187 aa3.96□□□□□ -1.78
TRIM28-207ENST00000597136 KRTAP5-1Q6L8H4 278 aa3.81□□□□□ -1.8
TRIM28-207ENST00000597136 LCE3DQ9BYE3 92 aa3.77□□□□□ -1.81
TRIM28-207ENST00000597136 LCE1EQ5T753 118 aa3.7□□□□□ -1.82
TRIM28-207ENST00000597136 MUC5ACP98088 5654 aa3.7□□□□□ -1.82
TRIM28-207ENST00000597136 KRTAP9-9Q9BYP9 154 aa3.66□□□□□ -1.82
TRIM28-207ENST00000597136 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
TRIM28-207ENST00000597136 MUC5BQ9HC84 5762 aaPredicted RBP3.61□□□□□ -1.83
TRIM28-207ENST00000597136 AHNAKQ09666 5890 aaKnown RBP3.55□□□□□ -1.84
TRIM28-207ENST00000597136 INE1O15225 51 aa3.52□□□□□ -1.85
TRIM28-207ENST00000597136 KRTAP4-2Q9BYR5 136 aa3.52□□□□□ -1.85
TRIM28-207ENST00000597136 LCE1BQ5T7P3 118 aa3.51□□□□□ -1.85
TRIM28-207ENST00000597136 LCE1CQ5T751 118 aa3.45□□□□□ -1.86
TRIM28-207ENST00000597136 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
TRIM28-207ENST00000597136 KRTAP4-12Q9BQ66 201 aa3.13□□□□□ -1.91
TRIM28-207ENST00000597136 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
TRIM28-207ENST00000597136 PRM1P04553 51 aa3.04□□□□□ -1.92
TRIM28-207ENST00000597136 KRTAP21-2Q3LI59 83 aa2.98□□□□□ -1.93
TRIM28-207ENST00000597136 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
TRIM28-207ENST00000597136 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
TRIM28-207ENST00000597136 PHGR1C9JFL3 82 aa2.67□□□□□ -1.98
TRIM28-207ENST00000597136 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
TRIM28-207ENST00000597136 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
TRIM28-207ENST00000597136 MUC16Q8WXI7 14507 aa1.74□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 82.9 ms