RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 LCE3BQ5TA77 95 aa5.51□□□□□ -1.53
UPF1-202ENST00000594243 KRTAP19-3Q7Z4W3 81 aa5.5□□□□□ -1.53
UPF1-202ENST00000594243 LCE5AQ5TCM9 118 aa5.48□□□□□ -1.53
UPF1-202ENST00000594243 KRTAP25-1Q3LHN0 102 aa5.43□□□□□ -1.54
UPF1-202ENST00000594243 PRO0628Q9UI54 55 aa5.42□□□□□ -1.54
UPF1-202ENST00000594243 MT1GP13640 62 aa5.41□□□□□ -1.54
UPF1-202ENST00000594243 PP632Q6XCG6 107 aa5.38□□□□□ -1.55
UPF1-202ENST00000594243 MT1LQ93083 61 aa5.35□□□□□ -1.55
UPF1-202ENST00000594243 KRTAP12-3P60328 96 aa5.32□□□□□ -1.56
UPF1-202ENST00000594243 CDC42SE1Q9NRR8 79 aa5.29□□□□□ -1.56
UPF1-202ENST00000594243 MT1MQ8N339 61 aa5.28□□□□□ -1.56
UPF1-202ENST00000594243 KRTAP23-1A1A580 65 aa5.25□□□□□ -1.57
UPF1-202ENST00000594243 GPR98Q8WXG9 6306 aa5.24□□□□□ -1.57
UPF1-202ENST00000594243 DSTQ03001 7570 aaKnown RBP5.21□□□□□ -1.57
UPF1-202ENST00000594243 ROMO1P60602 79 aa5.21□□□□□ -1.58
UPF1-202ENST00000594243 BRK1Q8WUW1 75 aa5.18□□□□□ -1.58
UPF1-202ENST00000594243 KRTAP4-9Q9BYQ8 210 aa5.17□□□□□ -1.58
UPF1-202ENST00000594243 KRTAP4-3Q9BYR4 195 aa5.13□□□□□ -1.59
UPF1-202ENST00000594243 KRTAP19-4Q3LI73 84 aa5.1□□□□□ -1.59
UPF1-202ENST00000594243 KRTAP4-7Q9BYR0 210 aa5.08□□□□□ -1.6
UPF1-202ENST00000594243 PMAIP1Q13794 54 aa5.07□□□□□ -1.6
UPF1-202ENST00000594243 KRTAP15-1Q3LI76 137 aa5.05□□□□□ -1.6
UPF1-202ENST00000594243 LCE1DQ5T752 114 aa5.02□□□□□ -1.61
UPF1-202ENST00000594243 LCE4AQ5TA78 99 aa5.02□□□□□ -1.61
UPF1-202ENST00000594243 HMCN1Q96RW7 5635 aa5□□□□□ -1.61
UPF1-202ENST00000594243 MT4P47944 62 aa4.98□□□□□ -1.61
UPF1-202ENST00000594243 KTN1-AS1Q86SY8 53 aa4.95□□□□□ -1.62
UPF1-202ENST00000594243 KRTAP5-4Q6L8H1 288 aa4.93□□□□□ -1.62
UPF1-202ENST00000594243 LCE3CQ5T5A8 94 aa4.92□□□□□ -1.62
UPF1-202ENST00000594243 AHNAK2Q8IVF2 5795 aa4.89□□□□□ -1.63
UPF1-202ENST00000594243 KRTAP5-5Q701N2 237 aaPredicted RBP4.82□□□□□ -1.64
UPF1-202ENST00000594243 LOC100996750A0A140TA64 210 aa4.81□□□□□ -1.64
UPF1-202ENST00000594243 KRTAP4-6Q9BYQ5 205 aa4.8□□□□□ -1.64
UPF1-202ENST00000594243 KRTAP5-10Q6L8G5 202 aa4.77□□□□□ -1.65
UPF1-202ENST00000594243 KRTAP12-4P60329 112 aa4.7□□□□□ -1.66
UPF1-202ENST00000594243 SPRR5A0A1B0GTR4 108 aa4.66□□□□□ -1.66
UPF1-202ENST00000594243 KRTAP20-2Q3LI61 65 aa4.64□□□□□ -1.67
UPF1-202ENST00000594243 KRTAP5-7Q6L8G8 165 aa4.6□□□□□ -1.67
UPF1-202ENST00000594243 KRTAP5-3Q6L8H2 238 aa4.6□□□□□ -1.67
UPF1-202ENST00000594243 KRTAP9-6A8MVA2 160 aa4.59□□□□□ -1.67
UPF1-202ENST00000594243 MT1AP04731 61 aa4.57□□□□□ -1.68
UPF1-202ENST00000594243 SYNE1Q8NF91 8797 aaKnown RBP4.52□□□□□ -1.69
UPF1-202ENST00000594243 KRTAP6-1Q3LI64 71 aa4.51□□□□□ -1.69
UPF1-202ENST00000594243 PRAC1Q96KF2 57 aa4.47□□□□□ -1.69
UPF1-202ENST00000594243 KRTAP9-4Q9BYQ2 154 aa4.41□□□□□ -1.7
UPF1-202ENST00000594243 KRTAP5-2Q701N4 177 aa4.34□□□□□ -1.71
UPF1-202ENST00000594243 H3BS24 57 aa4.3□□□□□ -1.72
UPF1-202ENST00000594243 KRTAP6-2Q3LI66 62 aa4.28□□□□□ -1.72
UPF1-202ENST00000594243 KRTAP4-11Q9BYQ6 195 aa4.21□□□□□ -1.74
UPF1-202ENST00000594243 MT3P25713 68 aa4.2□□□□□ -1.74
UPF1-202ENST00000594243 KRTAP5-8O75690 187 aa4.1□□□□□ -1.75
UPF1-202ENST00000594243 MUC5BQ9HC84 5762 aaPredicted RBP4.07□□□□□ -1.76
UPF1-202ENST00000594243 AHNAKQ09666 5890 aaKnown RBP4.05□□□□□ -1.76
UPF1-202ENST00000594243 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
UPF1-202ENST00000594243 OBSCNQ5VST9 7968 aa3.97□□□□□ -1.77
UPF1-202ENST00000594243 KRTAP9-9Q9BYP9 154 aa3.9□□□□□ -1.79
UPF1-202ENST00000594243 NDUFAF8A1L188 74 aa3.87□□□□□ -1.79
UPF1-202ENST00000594243 KRTAP5-1Q6L8H4 278 aa3.86□□□□□ -1.79
UPF1-202ENST00000594243 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
UPF1-202ENST00000594243 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
UPF1-202ENST00000594243 A0A0A0MQY5 61 aa3.66□□□□□ -1.82
UPF1-202ENST00000594243 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
UPF1-202ENST00000594243 LCE1BQ5T7P3 118 aa3.55□□□□□ -1.84
UPF1-202ENST00000594243 LCE1CQ5T751 118 aa3.53□□□□□ -1.84
UPF1-202ENST00000594243 KRTAP4-2Q9BYR5 136 aa3.53□□□□□ -1.84
UPF1-202ENST00000594243 LCE3EQ5T5B0 92 aa3.42□□□□□ -1.86
UPF1-202ENST00000594243 INE1O15225 51 aa3.36□□□□□ -1.87
UPF1-202ENST00000594243 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
UPF1-202ENST00000594243 KRTAP4-12Q9BQ66 201 aa3.19□□□□□ -1.9
UPF1-202ENST00000594243 KRTAP5-11Q6L8G4 156 aa3.16□□□□□ -1.9
UPF1-202ENST00000594243 LCE1FQ5T754 118 aa3.06□□□□□ -1.92
UPF1-202ENST00000594243 KRTAP21-2Q3LI59 83 aa2.98□□□□□ -1.93
UPF1-202ENST00000594243 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
UPF1-202ENST00000594243 KRTAP4-4Q9BYR3 166 aa2.68□□□□□ -1.98
UPF1-202ENST00000594243 PRM1P04553 51 aa2.66□□□□□ -1.98
UPF1-202ENST00000594243 MUC19Q7Z5P9 8384 aa2.47□□□□□ -2.01
UPF1-202ENST00000594243 KRTAP21-1Q3LI58 79 aa2.08□□□□□ -2.08
UPF1-202ENST00000594243 MUC16Q8WXI7 14507 aa1.79□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 89.1 ms