RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 FSIP2Q5CZC0 6907 aa5.49□□□□□ -1.53
LIG1-206ENST00000594067 KRTAP4-3Q9BYR4 195 aa5.44□□□□□ -1.54
LIG1-206ENST00000594067 LOC100996750A0A140TA64 210 aa5.42□□□□□ -1.54
LIG1-206ENST00000594067 FCGBPQ9Y6R7 5405 aaPredicted RBP5.39□□□□□ -1.55
LIG1-206ENST00000594067 LCE2DQ5TA82 110 aaPredicted RBP5.39□□□□□ -1.55
LIG1-206ENST00000594067 MT1GP13640 62 aa5.36□□□□□ -1.55
LIG1-206ENST00000594067 MUC12Q9UKN1 5478 aa5.35□□□□□ -1.55
LIG1-206ENST00000594067 MT1MQ8N339 61 aa5.31□□□□□ -1.56
LIG1-206ENST00000594067 KRTAP19-3Q7Z4W3 81 aa5.3□□□□□ -1.56
LIG1-206ENST00000594067 CRCT1Q9UGL9 99 aa5.27□□□□□ -1.57
LIG1-206ENST00000594067 SPRR2FQ96RM1 72 aa5.11□□□□□ -1.59
LIG1-206ENST00000594067 KRTAP12-4P60329 112 aa5.11□□□□□ -1.59
LIG1-206ENST00000594067 DSTQ03001 7570 aaKnown RBP5.11□□□□□ -1.59
LIG1-206ENST00000594067 LCE5AQ5TCM9 118 aa5.1□□□□□ -1.59
LIG1-206ENST00000594067 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
LIG1-206ENST00000594067 MACF1Q9UPN3 7388 aaKnown RBP4.96□□□□□ -1.62
LIG1-206ENST00000594067 KRTAP9-2Q9BYQ4 174 aa4.94□□□□□ -1.62
LIG1-206ENST00000594067 KRTAP4-9Q9BYQ8 210 aa4.9□□□□□ -1.63
LIG1-206ENST00000594067 KRTAP6-1Q3LI64 71 aa4.85□□□□□ -1.63
LIG1-206ENST00000594067 SYNE1Q8NF91 8797 aaKnown RBP4.83□□□□□ -1.64
LIG1-206ENST00000594067 MDN1Q9NU22 5596 aa4.83□□□□□ -1.64
LIG1-206ENST00000594067 MT1AP04731 61 aa4.79□□□□□ -1.64
LIG1-206ENST00000594067 SYNE2Q8WXH0 6885 aaKnown RBP4.79□□□□□ -1.64
LIG1-206ENST00000594067 LCE1AQ5T7P2 110 aa4.73□□□□□ -1.65
LIG1-206ENST00000594067 LCE3DQ9BYE3 92 aa4.67□□□□□ -1.66
LIG1-206ENST00000594067 KRTAP9-6A0A140TA67 174 aa4.66□□□□□ -1.66
LIG1-206ENST00000594067 KRTAP5-5Q701N2 237 aaPredicted RBP4.66□□□□□ -1.66
LIG1-206ENST00000594067 KRTAP5-9P26371 169 aa4.66□□□□□ -1.66
LIG1-206ENST00000594067 LCE3EQ5T5B0 92 aa4.63□□□□□ -1.67
LIG1-206ENST00000594067 SPRR2EP22531 72 aa4.62□□□□□ -1.67
LIG1-206ENST00000594067 SPRR2BP35325 72 aa4.62□□□□□ -1.67
LIG1-206ENST00000594067 SPRR2AP35326 72 aa4.62□□□□□ -1.67
LIG1-206ENST00000594067 KRTAP9-7A8MTY7 169 aa4.59□□□□□ -1.68
LIG1-206ENST00000594067 PRM1P04553 51 aa4.54□□□□□ -1.68
LIG1-206ENST00000594067 KRTAP9-4Q9BYQ2 154 aa4.49□□□□□ -1.69
LIG1-206ENST00000594067 SPRR2DP22532 72 aa4.42□□□□□ -1.7
LIG1-206ENST00000594067 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.35□□□□□ -1.71
LIG1-206ENST00000594067 KRTAP6-2Q3LI66 62 aa4.35□□□□□ -1.71
LIG1-206ENST00000594067 OBSCNQ5VST9 7968 aa4.3□□□□□ -1.72
LIG1-206ENST00000594067 MT3P25713 68 aa4.28□□□□□ -1.73
LIG1-206ENST00000594067 KRTAP6-3Q3LI67 103 aa4.28□□□□□ -1.73
LIG1-206ENST00000594067 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
LIG1-206ENST00000594067 KRTAP5-4Q6L8H1 288 aa4.05□□□□□ -1.76
LIG1-206ENST00000594067 KRTAP4-6Q9BYQ5 205 aa3.97□□□□□ -1.77
LIG1-206ENST00000594067 NEBP20929 6669 aa3.95□□□□□ -1.78
LIG1-206ENST00000594067 MT4P47944 62 aa3.93□□□□□ -1.78
LIG1-206ENST00000594067 KRTAP20-2Q3LI61 65 aa3.84□□□□□ -1.79
LIG1-206ENST00000594067 LCE1EQ5T753 118 aa3.84□□□□□ -1.79
LIG1-206ENST00000594067 KRTAP5-2Q701N4 177 aa3.8□□□□□ -1.8
LIG1-206ENST00000594067 LCE4AQ5TA78 99 aa3.77□□□□□ -1.81
LIG1-206ENST00000594067 HMCN1Q96RW7 5635 aa3.72□□□□□ -1.81
LIG1-206ENST00000594067 LCE1DQ5T752 114 aa3.69□□□□□ -1.82
LIG1-206ENST00000594067 KRTAP20-1Q3LI63 56 aa3.68□□□□□ -1.82
LIG1-206ENST00000594067 MUC5ACP98088 5654 aa3.65□□□□□ -1.83
LIG1-206ENST00000594067 KRTAP5-3Q6L8H2 238 aa3.64□□□□□ -1.83
LIG1-206ENST00000594067 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
LIG1-206ENST00000594067 LCE1BQ5T7P3 118 aa3.5□□□□□ -1.85
LIG1-206ENST00000594067 KRTAP4-11Q9BYQ6 195 aa3.41□□□□□ -1.86
LIG1-206ENST00000594067 KRTAP5-10Q6L8G5 202 aa3.4□□□□□ -1.86
LIG1-206ENST00000594067 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.88
LIG1-206ENST00000594067 KRTAP4-2Q9BYR5 136 aa3.31□□□□□ -1.88
LIG1-206ENST00000594067 LCE1CQ5T751 118 aa3.26□□□□□ -1.89
LIG1-206ENST00000594067 KRTAP21-2Q3LI59 83 aa3.11□□□□□ -1.91
LIG1-206ENST00000594067 KRTAP9-9Q9BYP9 154 aa3.09□□□□□ -1.91
LIG1-206ENST00000594067 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.07□□□□□ -1.92
LIG1-206ENST00000594067 GPR98Q8WXG9 6306 aa3.03□□□□□ -1.92
LIG1-206ENST00000594067 AHNAK2Q8IVF2 5795 aa3.02□□□□□ -1.93
LIG1-206ENST00000594067 KRTAP5-8O75690 187 aa3.01□□□□□ -1.93
LIG1-206ENST00000594067 KRTAP5-7Q6L8G8 165 aa2.93□□□□□ -1.94
LIG1-206ENST00000594067 KRTAP4-4Q9BYR3 166 aa2.91□□□□□ -1.94
LIG1-206ENST00000594067 KRTAP21-1Q3LI58 79 aa2.89□□□□□ -1.95
LIG1-206ENST00000594067 KRTAP5-11Q6L8G4 156 aa2.8□□□□□ -1.96
LIG1-206ENST00000594067 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
LIG1-206ENST00000594067 MUC5BQ9HC84 5762 aaPredicted RBP2.74□□□□□ -1.97
LIG1-206ENST00000594067 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
LIG1-206ENST00000594067 PHGR1C9JFL3 82 aa2.43□□□□□ -2.02
LIG1-206ENST00000594067 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
LIG1-206ENST00000594067 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.15
Retrieved 78 of 20,778 RNA–protein pairs in 71.1 ms