RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 UBR4Q5T4S7 5183 aa4.42□□□□□ -1.7
SMARCA4-216ENST00000591545 KRTAP9-6A0A140TA67 174 aa4.41□□□□□ -1.7
SMARCA4-216ENST00000591545 LCE3EQ5T5B0 92 aa4.39□□□□□ -1.71
SMARCA4-216ENST00000591545 LCE2AQ5TA79 106 aaPredicted RBP4.37□□□□□ -1.71
SMARCA4-216ENST00000591545 MT1EP04732 61 aa4.35□□□□□ -1.71
SMARCA4-216ENST00000591545 MT1LQ93083 61 aa4.35□□□□□ -1.71
SMARCA4-216ENST00000591545 MT1MQ8N339 61 aa4.24□□□□□ -1.73
SMARCA4-216ENST00000591545 MT4P47944 62 aa4.22□□□□□ -1.73
SMARCA4-216ENST00000591545 KRTAP4-7Q9BYR0 210 aa4.22□□□□□ -1.73
SMARCA4-216ENST00000591545 MT3P25713 68 aa4.16□□□□□ -1.74
SMARCA4-216ENST00000591545 FSIP2Q5CZC0 6907 aa4.16□□□□□ -1.74
SMARCA4-216ENST00000591545 KRTAP9-7A8MTY7 169 aa4.14□□□□□ -1.75
SMARCA4-216ENST00000591545 SYNE1Q8NF91 8797 aaKnown RBP4.13□□□□□ -1.75
SMARCA4-216ENST00000591545 KRTAP20-1Q3LI63 56 aa4.11□□□□□ -1.75
SMARCA4-216ENST00000591545 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
SMARCA4-216ENST00000591545 KRTAP19-7Q3SYF9 63 aa4.05□□□□□ -1.76
SMARCA4-216ENST00000591545 PRM1P04553 51 aa4□□□□□ -1.77
SMARCA4-216ENST00000591545 LCE1AQ5T7P2 110 aa4□□□□□ -1.77
SMARCA4-216ENST00000591545 KRTAP4-3Q9BYR4 195 aa4□□□□□ -1.77
SMARCA4-216ENST00000591545 SYNE2Q8WXH0 6885 aaKnown RBP3.98□□□□□ -1.77
SMARCA4-216ENST00000591545 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.97□□□□□ -1.77
SMARCA4-216ENST00000591545 KRTAP2-3P0C7H8 128 aa3.97□□□□□ -1.77
SMARCA4-216ENST00000591545 KRTAP2-4Q9BYR9 128 aa3.97□□□□□ -1.77
SMARCA4-216ENST00000591545 LOC100996750A0A140TA64 210 aa3.96□□□□□ -1.77
SMARCA4-216ENST00000591545 MT1AP04731 61 aa3.94□□□□□ -1.78
SMARCA4-216ENST00000591545 LCE1DQ5T752 114 aa3.92□□□□□ -1.78
SMARCA4-216ENST00000591545 KRTAP2-1Q9BYU5 128 aa3.92□□□□□ -1.78
SMARCA4-216ENST00000591545 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
SMARCA4-216ENST00000591545 USH2AO75445 5202 aa3.85□□□□□ -1.79
SMARCA4-216ENST00000591545 KRTAP9-6A8MVA2 160 aa3.84□□□□□ -1.79
SMARCA4-216ENST00000591545 KRTAP2-2Q9BYT5 123 aa3.83□□□□□ -1.8
SMARCA4-216ENST00000591545 KMT2DO14686 5537 aa3.82□□□□□ -1.8
SMARCA4-216ENST00000591545 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
SMARCA4-216ENST00000591545 LCE5AQ5TCM9 118 aa3.74□□□□□ -1.81
SMARCA4-216ENST00000591545 OBSCNQ5VST9 7968 aa3.69□□□□□ -1.82
SMARCA4-216ENST00000591545 KRTAP4-9Q9BYQ8 210 aa3.69□□□□□ -1.82
SMARCA4-216ENST00000591545 KRTAP9-4Q9BYQ2 154 aa3.62□□□□□ -1.83
SMARCA4-216ENST00000591545 KRTAP6-1Q3LI64 71 aa3.62□□□□□ -1.83
SMARCA4-216ENST00000591545 KRTAP6-2Q3LI66 62 aa3.61□□□□□ -1.83
SMARCA4-216ENST00000591545 SSPOA2VEC9 5147 aa3.59□□□□□ -1.83
SMARCA4-216ENST00000591545 FCGBPQ9Y6R7 5405 aaPredicted RBP3.55□□□□□ -1.84
SMARCA4-216ENST00000591545 MACF1Q9UPN3 7388 aaKnown RBP3.48□□□□□ -1.85
SMARCA4-216ENST00000591545 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
SMARCA4-216ENST00000591545 MUC12Q9UKN1 5478 aa3.46□□□□□ -1.86
SMARCA4-216ENST00000591545 NEBP20929 6669 aa3.42□□□□□ -1.86
SMARCA4-216ENST00000591545 KRTAP5-9P26371 169 aa3.41□□□□□ -1.86
SMARCA4-216ENST00000591545 LCE1CQ5T751 118 aa3.37□□□□□ -1.87
SMARCA4-216ENST00000591545 LCE1EQ5T753 118 aa3.37□□□□□ -1.87
SMARCA4-216ENST00000591545 LCE1FQ5T754 118 aa3.37□□□□□ -1.87
SMARCA4-216ENST00000591545 KRTAP9-9Q9BYP9 154 aa3.32□□□□□ -1.88
SMARCA4-216ENST00000591545 GPR98Q8WXG9 6306 aa3.25□□□□□ -1.89
SMARCA4-216ENST00000591545 MDN1Q9NU22 5596 aa3.19□□□□□ -1.9
SMARCA4-216ENST00000591545 KRTAP4-6Q9BYQ5 205 aa3.15□□□□□ -1.91
SMARCA4-216ENST00000591545 KRTAP20-2Q3LI61 65 aa3.14□□□□□ -1.91
SMARCA4-216ENST00000591545 MUC19Q7Z5P9 8384 aa3.03□□□□□ -1.92
SMARCA4-216ENST00000591545 KRTAP5-4Q6L8H1 288 aa2.97□□□□□ -1.93
SMARCA4-216ENST00000591545 KRTAP5-5Q701N2 237 aaPredicted RBP2.97□□□□□ -1.93
SMARCA4-216ENST00000591545 KRTAP4-11Q9BYQ6 195 aa2.89□□□□□ -1.95
SMARCA4-216ENST00000591545 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
SMARCA4-216ENST00000591545 KRTAP4-2Q9BYR5 136 aa2.73□□□□□ -1.97
SMARCA4-216ENST00000591545 KRTAP5-3Q6L8H2 238 aa2.68□□□□□ -1.98
SMARCA4-216ENST00000591545 AHNAK2Q8IVF2 5795 aa2.67□□□□□ -1.98
SMARCA4-216ENST00000591545 KRTAP4-4Q9BYR3 166 aa2.66□□□□□ -1.98
SMARCA4-216ENST00000591545 MUC5ACP98088 5654 aa2.56□□□□□ -2
SMARCA4-216ENST00000591545 HMCN1Q96RW7 5635 aa2.51□□□□□ -2.01
SMARCA4-216ENST00000591545 KRTAP5-2Q701N4 177 aa2.43□□□□□ -2.02
SMARCA4-216ENST00000591545 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
SMARCA4-216ENST00000591545 KRTAP5-10Q6L8G5 202 aa2.25□□□□□ -2.05
SMARCA4-216ENST00000591545 PHGR1C9JFL3 82 aa2.18□□□□□ -2.06
SMARCA4-216ENST00000591545 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
SMARCA4-216ENST00000591545 MUC5BQ9HC84 5762 aaPredicted RBP2.15□□□□□ -2.06
SMARCA4-216ENST00000591545 KRTAP5-1Q6L8H4 278 aa2.12□□□□□ -2.07
SMARCA4-216ENST00000591545 KRTAP5-11Q6L8G4 156 aa2.06□□□□□ -2.08
SMARCA4-216ENST00000591545 KRTAP21-2Q3LI59 83 aa2.02□□□□□ -2.09
SMARCA4-216ENST00000591545 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
SMARCA4-216ENST00000591545 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.92□□□□□ -2.1
SMARCA4-216ENST00000591545 KRTAP21-1Q3LI58 79 aa1.87□□□□□ -2.11
SMARCA4-216ENST00000591545 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 636.4 ms