RNA–Protein interactions for RNA: ENST00000591126.5

SMAD4-212, Transcript of SMAD family member 4, humanhuman

TSL 1 (best)

Gene SMAD4, Length 4,970 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-212ENST00000591126 KRTAP19-2Q3LHN2 52 aa2.27□□□□□ -2.05
SMAD4-212ENST00000591126 KRTAP2-4Q9BYR9 128 aa2.27□□□□□ -2.05
SMAD4-212ENST00000591126 FAT4Q6V0I7 4981 aa2.26□□□□□ -2.05
SMAD4-212ENST00000591126 KRTAP19-3Q7Z4W3 81 aa2.25□□□□□ -2.05
SMAD4-212ENST00000591126 FSIP2Q5CZC0 6907 aa2.23□□□□□ -2.05
SMAD4-212ENST00000591126 LCE3BQ5TA77 95 aa2.22□□□□□ -2.05
SMAD4-212ENST00000591126 MUC17Q685J3 4493 aa2.21□□□□□ -2.06
SMAD4-212ENST00000591126 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.2□□□□□ -2.06
SMAD4-212ENST00000591126 KRTAP2-2Q9BYT5 123 aa2.17□□□□□ -2.06
SMAD4-212ENST00000591126 KRTAP2-1Q9BYU5 128 aa2.17□□□□□ -2.06
SMAD4-212ENST00000591126 MT1LQ93083 61 aa2.17□□□□□ -2.06
SMAD4-212ENST00000591126 LCE4AQ5TA78 99 aa2.16□□□□□ -2.06
SMAD4-212ENST00000591126 MT1EP04732 61 aa2.13□□□□□ -2.07
SMAD4-212ENST00000591126 MT3P25713 68 aa2.1□□□□□ -2.07
SMAD4-212ENST00000591126 MT1MQ8N339 61 aa2.09□□□□□ -2.07
SMAD4-212ENST00000591126 KRTAP4-8Q9BYQ9 185 aa2.07□□□□□ -2.08
SMAD4-212ENST00000591126 FLGP20930 4061 aaPredicted RBP2.07□□□□□ -2.08
SMAD4-212ENST00000591126 KRTAP4-8A0A0G2JLE6 195 aa2.05□□□□□ -2.08
SMAD4-212ENST00000591126 MT4P47944 62 aa2.01□□□□□ -2.09
SMAD4-212ENST00000591126 USH2AO75445 5202 aa2.01□□□□□ -2.09
SMAD4-212ENST00000591126 LCE5AQ5TCM9 118 aa1.99□□□□□ -2.09
SMAD4-212ENST00000591126 MT1AP04731 61 aa1.98□□□□□ -2.09
SMAD4-212ENST00000591126 LCE3DQ9BYE3 92 aa1.98□□□□□ -2.09
SMAD4-212ENST00000591126 KRTAP4-2Q9BYR5 136 aa1.97□□□□□ -2.09
SMAD4-212ENST00000591126 KRTAP4-12Q9BQ66 201 aa1.96□□□□□ -2.1
SMAD4-212ENST00000591126 KRTAP9-4Q9BYQ2 154 aa1.96□□□□□ -2.1
SMAD4-212ENST00000591126 SPRR5A0A1B0GTR4 108 aa1.95□□□□□ -2.1
SMAD4-212ENST00000591126 LCE3EQ5T5B0 92 aa1.95□□□□□ -2.1
SMAD4-212ENST00000591126 KRTAP5-9P26371 169 aa1.95□□□□□ -2.1
SMAD4-212ENST00000591126 KRTAP9-9Q9BYP9 154 aa1.95□□□□□ -2.1
SMAD4-212ENST00000591126 LCE1FQ5T754 118 aa1.92□□□□□ -2.1
SMAD4-212ENST00000591126 SSPOA2VEC9 5147 aa1.91□□□□□ -2.1
SMAD4-212ENST00000591126 KRTAP19-7Q3SYF9 63 aa1.91□□□□□ -2.1
SMAD4-212ENST00000591126 FCGBPQ9Y6R7 5405 aaPredicted RBP1.9□□□□□ -2.11
SMAD4-212ENST00000591126 KRTAP5-3Q6L8H2 238 aa1.89□□□□□ -2.11
SMAD4-212ENST00000591126 KRTAP4-7Q9BYR0 210 aa1.88□□□□□ -2.11
SMAD4-212ENST00000591126 LCE1EQ5T753 118 aa1.85□□□□□ -2.11
SMAD4-212ENST00000591126 SYNE2Q8WXH0 6885 aaKnown RBP1.85□□□□□ -2.11
SMAD4-212ENST00000591126 MACF1Q9UPN3 7388 aaKnown RBP1.84□□□□□ -2.11
SMAD4-212ENST00000591126 NEBP20929 6669 aa1.83□□□□□ -2.12
SMAD4-212ENST00000591126 LCE1DQ5T752 114 aa1.81□□□□□ -2.12
SMAD4-212ENST00000591126 OBSCNQ5VST9 7968 aa1.8□□□□□ -2.12
SMAD4-212ENST00000591126 LCE1BQ5T7P3 118 aa1.78□□□□□ -2.12
SMAD4-212ENST00000591126 KMT2DO14686 5537 aa1.77□□□□□ -2.13
SMAD4-212ENST00000591126 KRTAP4-9Q9BYQ8 210 aa1.76□□□□□ -2.13
SMAD4-212ENST00000591126 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.75□□□□□ -2.13
SMAD4-212ENST00000591126 MUC12Q9UKN1 5478 aa1.74□□□□□ -2.13
SMAD4-212ENST00000591126 DSTQ03001 7570 aaKnown RBP1.73□□□□□ -2.13
SMAD4-212ENST00000591126 KRTAP4-3Q9BYR4 195 aa1.7□□□□□ -2.14
SMAD4-212ENST00000591126 KRTAP5-2Q701N4 177 aa1.7□□□□□ -2.14
SMAD4-212ENST00000591126 KRTAP6-2Q3LI66 62 aa1.69□□□□□ -2.14
SMAD4-212ENST00000591126 KRTAP5-4Q6L8H1 288 aa1.69□□□□□ -2.14
SMAD4-212ENST00000591126 MDN1Q9NU22 5596 aa1.69□□□□□ -2.14
SMAD4-212ENST00000591126 KRTAP6-1Q3LI64 71 aa1.66□□□□□ -2.14
SMAD4-212ENST00000591126 KRTAP20-2Q3LI61 65 aa1.64□□□□□ -2.15
SMAD4-212ENST00000591126 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
SMAD4-212ENST00000591126 MUC19Q7Z5P9 8384 aa1.63□□□□□ -2.15
SMAD4-212ENST00000591126 SYNE1Q8NF91 8797 aaKnown RBP1.61□□□□□ -2.15
SMAD4-212ENST00000591126 LCE1CQ5T751 118 aa1.59□□□□□ -2.16
SMAD4-212ENST00000591126 KRTAP4-11Q9BYQ6 195 aa1.58□□□□□ -2.16
SMAD4-212ENST00000591126 PRM1P04553 51 aa1.54□□□□□ -2.16
SMAD4-212ENST00000591126 KRTAP9-6A8MVA2 160 aa1.43□□□□□ -2.18
SMAD4-212ENST00000591126 KRTAP5-5Q701N2 237 aaPredicted RBP1.41□□□□□ -2.18
SMAD4-212ENST00000591126 HMCN1Q96RW7 5635 aa1.41□□□□□ -2.18
SMAD4-212ENST00000591126 AHNAK2Q8IVF2 5795 aa1.41□□□□□ -2.18
SMAD4-212ENST00000591126 MUC5ACP98088 5654 aa1.32□□□□□ -2.2
SMAD4-212ENST00000591126 KRTAP5-7Q6L8G8 165 aa1.3□□□□□ -2.2
SMAD4-212ENST00000591126 KRTAP5-8O75690 187 aa1.28□□□□□ -2.21
SMAD4-212ENST00000591126 KRTAP4-4Q9BYR3 166 aa1.24□□□□□ -2.21
SMAD4-212ENST00000591126 AHNAKQ09666 5890 aaKnown RBP1.24□□□□□ -2.21
SMAD4-212ENST00000591126 KRTAP5-11Q6L8G4 156 aa1.24□□□□□ -2.21
SMAD4-212ENST00000591126 KRTAP5-10Q6L8G5 202 aa1.21□□□□□ -2.22
SMAD4-212ENST00000591126 PHGR1C9JFL3 82 aa1.14□□□□□ -2.23
SMAD4-212ENST00000591126 KRTAP5-1Q6L8H4 278 aa1.12□□□□□ -2.23
SMAD4-212ENST00000591126 MUC5BQ9HC84 5762 aaPredicted RBP1.07□□□□□ -2.24
SMAD4-212ENST00000591126 KRTAP21-1Q3LI58 79 aa0.98□□□□□ -2.25
SMAD4-212ENST00000591126 KRTAP21-2Q3LI59 83 aa0.95□□□□□ -2.26
SMAD4-212ENST00000591126 MUC16Q8WXI7 14507 aa0.64□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 294.3 ms