RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 KRTAP10-10P60014 251 aa2.09□□□□□ -2.07
LIG3-211ENST00000588713 SPRR2EP22531 72 aa2.08□□□□□ -2.08
LIG3-211ENST00000588713 SPRR2BP35325 72 aa2.08□□□□□ -2.08
LIG3-211ENST00000588713 SPRR2AP35326 72 aa2.08□□□□□ -2.08
LIG3-211ENST00000588713 C9orf92A6NGG3 77 aa2.07□□□□□ -2.08
LIG3-211ENST00000588713 CRIPTQ9P021 101 aa2.07□□□□□ -2.08
LIG3-211ENST00000588713 KRTAP13-4Q3LI77 160 aa2.06□□□□□ -2.08
LIG3-211ENST00000588713 S4R3F8 94 aa2.06□□□□□ -2.08
LIG3-211ENST00000588713 SPRR5A0A1B0GTR4 108 aa2.05□□□□□ -2.08
LIG3-211ENST00000588713 NDUFAF8A1L188 74 aa2.05□□□□□ -2.08
LIG3-211ENST00000588713 A0A0D9SG42 100 aa2.03□□□□□ -2.08
LIG3-211ENST00000588713 C10orf95Q9H7T3 257 aa2.03□□□□□ -2.08
LIG3-211ENST00000588713 MT3P25713 68 aa2.02□□□□□ -2.09
LIG3-211ENST00000588713 KRTAP12-1P59990 96 aa2.02□□□□□ -2.09
LIG3-211ENST00000588713 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
LIG3-211ENST00000588713 M0QZ58 72 aa2.01□□□□□ -2.09
LIG3-211ENST00000588713 SPRR2DP22532 72 aa2.01□□□□□ -2.09
LIG3-211ENST00000588713 KRTAP12-2P59991 146 aa2.01□□□□□ -2.09
LIG3-211ENST00000588713 KRTAP5-1Q6L8H4 278 aa1.99□□□□□ -2.09
LIG3-211ENST00000588713 SPRR2FQ96RM1 72 aa1.99□□□□□ -2.09
LIG3-211ENST00000588713 DSTQ03001 7570 aaKnown RBP1.98□□□□□ -2.09
LIG3-211ENST00000588713 KRTAP5-10Q6L8G5 202 aa1.96□□□□□ -2.1
LIG3-211ENST00000588713 LUZP6Q538Z0 58 aa1.95□□□□□ -2.1
LIG3-211ENST00000588713 PP632Q6XCG6 107 aa1.94□□□□□ -2.1
LIG3-211ENST00000588713 KRTAP10-5P60370 271 aa1.93□□□□□ -2.1
LIG3-211ENST00000588713 KRTAP5-7Q6L8G8 165 aa1.93□□□□□ -2.1
LIG3-211ENST00000588713 PLAC4Q8WY50 150 aa1.92□□□□□ -2.1
LIG3-211ENST00000588713 KRTAP5-4Q6L8H1 288 aa1.91□□□□□ -2.1
LIG3-211ENST00000588713 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
LIG3-211ENST00000588713 HMCN1Q96RW7 5635 aa1.9□□□□□ -2.1
LIG3-211ENST00000588713 R4GN34 69 aa1.89□□□□□ -2.11
LIG3-211ENST00000588713 KRTAP9-6A8MVA2 160 aa1.88□□□□□ -2.11
LIG3-211ENST00000588713 AHNAKQ09666 5890 aaKnown RBP1.82□□□□□ -2.12
LIG3-211ENST00000588713 MT4P47944 62 aa1.82□□□□□ -2.12
LIG3-211ENST00000588713 OBSCNQ5VST9 7968 aa1.82□□□□□ -2.12
LIG3-211ENST00000588713 KRTAP10-12P60413 245 aa1.81□□□□□ -2.12
LIG3-211ENST00000588713 KRTAP8-1Q8IUC2 63 aa1.81□□□□□ -2.12
LIG3-211ENST00000588713 CAMK2N1Q7Z7J9 78 aa1.8□□□□□ -2.12
LIG3-211ENST00000588713 TNP1P09430 55 aa1.79□□□□□ -2.12
LIG3-211ENST00000588713 MT1BP07438 61 aa1.77□□□□□ -2.13
LIG3-211ENST00000588713 LCE1FQ5T754 118 aa1.76□□□□□ -2.13
LIG3-211ENST00000588713 PRO2289Q9P1D8 64 aa1.76□□□□□ -2.13
LIG3-211ENST00000588713 MUC5BQ9HC84 5762 aaPredicted RBP1.74□□□□□ -2.13
LIG3-211ENST00000588713 INE1O15225 51 aa1.74□□□□□ -2.13
LIG3-211ENST00000588713 LCE3CQ5T5A8 94 aa1.7□□□□□ -2.14
LIG3-211ENST00000588713 KRTAP4-3Q9BYR4 195 aa1.7□□□□□ -2.14
LIG3-211ENST00000588713 MUC5ACP98088 5654 aa1.7□□□□□ -2.14
LIG3-211ENST00000588713 KRTAP19-8Q3LI54 63 aa1.66□□□□□ -2.14
LIG3-211ENST00000588713 SPRR2GQ9BYE4 73 aa1.66□□□□□ -2.14
LIG3-211ENST00000588713 LCE3AQ5TA76 89 aa1.64□□□□□ -2.15
LIG3-211ENST00000588713 KRTAP5-2Q701N4 177 aa1.58□□□□□ -2.16
LIG3-211ENST00000588713 KRTAP12-3P60328 96 aa1.57□□□□□ -2.16
LIG3-211ENST00000588713 KRTAP5-8O75690 187 aa1.55□□□□□ -2.16
LIG3-211ENST00000588713 MT1XP80297 61 aa1.55□□□□□ -2.16
LIG3-211ENST00000588713 KRTAP20-2Q3LI61 65 aa1.54□□□□□ -2.16
LIG3-211ENST00000588713 LCE3EQ5T5B0 92 aa1.54□□□□□ -2.16
LIG3-211ENST00000588713 KRTAP19-3Q7Z4W3 81 aa1.49□□□□□ -2.17
LIG3-211ENST00000588713 KRTAP19-5Q3LI72 72 aa1.44□□□□□ -2.18
LIG3-211ENST00000588713 KRTAP5-5Q701N2 237 aaPredicted RBP1.44□□□□□ -2.18
LIG3-211ENST00000588713 MT1EP04732 61 aa1.4□□□□□ -2.19
LIG3-211ENST00000588713 LCE1CQ5T751 118 aa1.4□□□□□ -2.19
LIG3-211ENST00000588713 LCE1BQ5T7P3 118 aa1.4□□□□□ -2.19
LIG3-211ENST00000588713 SYNE1Q8NF91 8797 aaKnown RBP1.4□□□□□ -2.19
LIG3-211ENST00000588713 KRTAP12-4P60329 112 aa1.39□□□□□ -2.19
LIG3-211ENST00000588713 MT1GP13640 62 aa1.38□□□□□ -2.19
LIG3-211ENST00000588713 KRTAP19-7Q3SYF9 63 aa1.37□□□□□ -2.19
LIG3-211ENST00000588713 MT1MQ8N339 61 aa1.37□□□□□ -2.19
LIG3-211ENST00000588713 MT1LQ93083 61 aa1.34□□□□□ -2.19
LIG3-211ENST00000588713 MT1AP04731 61 aa1.22□□□□□ -2.21
LIG3-211ENST00000588713 MUC19Q7Z5P9 8384 aa1.21□□□□□ -2.22
LIG3-211ENST00000588713 PHGR1C9JFL3 82 aa1.2□□□□□ -2.22
LIG3-211ENST00000588713 LCE3DQ9BYE3 92 aa1.19□□□□□ -2.22
LIG3-211ENST00000588713 PRM1P04553 51 aa1.15□□□□□ -2.23
LIG3-211ENST00000588713 KRTAP6-2Q3LI66 62 aa1.15□□□□□ -2.23
LIG3-211ENST00000588713 KRTAP6-1Q3LI64 71 aa1.11□□□□□ -2.23
LIG3-211ENST00000588713 KRTAP21-2Q3LI59 83 aa1□□□□□ -2.25
LIG3-211ENST00000588713 KRTAP21-1Q3LI58 79 aa0.89□□□□□ -2.27
LIG3-211ENST00000588713 MUC16Q8WXI7 14507 aa0.6□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 124.2 ms