RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 LCE1AQ5T7P2 110 aa7.63□□□□□ -1.19
ATG4D-208ENST00000588667 KRTAP19-7Q3SYF9 63 aa7.53□□□□□ -1.2
ATG4D-208ENST00000588667 KRTAP20-1Q3LI63 56 aa7.48□□□□□ -1.21
ATG4D-208ENST00000588667 MT1EP04732 61 aa7.45□□□□□ -1.22
ATG4D-208ENST00000588667 KRTAP19-5Q3LI72 72 aa7.43□□□□□ -1.22
ATG4D-208ENST00000588667 SPRR2DP22532 72 aa7.42□□□□□ -1.22
ATG4D-208ENST00000588667 KRTAP12-3P60328 96 aa7.38□□□□□ -1.23
ATG4D-208ENST00000588667 KRTAP2-3P0C7H8 128 aa7.38□□□□□ -1.23
ATG4D-208ENST00000588667 KRTAP2-4Q9BYR9 128 aa7.38□□□□□ -1.23
ATG4D-208ENST00000588667 KRTAP19-3Q7Z4W3 81 aa7.32□□□□□ -1.24
ATG4D-208ENST00000588667 LCE5AQ5TCM9 118 aa7.3□□□□□ -1.24
ATG4D-208ENST00000588667 KRTAP15-1Q3LI76 137 aa7.22□□□□□ -1.25
ATG4D-208ENST00000588667 MT1GP13640 62 aa7.19□□□□□ -1.26
ATG4D-208ENST00000588667 LCE3BQ5TA77 95 aa7.19□□□□□ -1.26
ATG4D-208ENST00000588667 MT1LQ93083 61 aa7.19□□□□□ -1.26
ATG4D-208ENST00000588667 KRTAP2-2Q9BYT5 123 aa7.16□□□□□ -1.26
ATG4D-208ENST00000588667 KRTAP2-1Q9BYU5 128 aa7.16□□□□□ -1.26
ATG4D-208ENST00000588667 DSTQ03001 7570 aaKnown RBP7.07□□□□□ -1.28
ATG4D-208ENST00000588667 MT1MQ8N339 61 aa7.07□□□□□ -1.28
ATG4D-208ENST00000588667 KRTAP19-4Q3LI73 84 aa6.98□□□□□ -1.29
ATG4D-208ENST00000588667 LCE3CQ5T5A8 94 aa6.89□□□□□ -1.31
ATG4D-208ENST00000588667 KRTAP4-3Q9BYR4 195 aa6.87□□□□□ -1.31
ATG4D-208ENST00000588667 SPRR5A0A1B0GTR4 108 aa6.82□□□□□ -1.32
ATG4D-208ENST00000588667 KRTAP4-7Q9BYR0 210 aa6.82□□□□□ -1.32
ATG4D-208ENST00000588667 LUZP6Q538Z0 58 aa6.62□□□□□ -1.35
ATG4D-208ENST00000588667 LCE4AQ5TA78 99 aa6.59□□□□□ -1.35
ATG4D-208ENST00000588667 KRTAP4-9Q9BYQ8 210 aa6.56□□□□□ -1.36
ATG4D-208ENST00000588667 KRTAP5-4Q6L8H1 288 aa6.54□□□□□ -1.36
ATG4D-208ENST00000588667 LCE1DQ5T752 114 aa6.48□□□□□ -1.37
ATG4D-208ENST00000588667 KRTAP9-6A8MVA2 160 aa6.47□□□□□ -1.37
ATG4D-208ENST00000588667 KRTAP5-5Q701N2 237 aaPredicted RBP6.46□□□□□ -1.38
ATG4D-208ENST00000588667 LOC100996750A0A140TA64 210 aa6.45□□□□□ -1.38
ATG4D-208ENST00000588667 MT4P47944 62 aa6.45□□□□□ -1.38
ATG4D-208ENST00000588667 HMCN1Q96RW7 5635 aa6.39□□□□□ -1.39
ATG4D-208ENST00000588667 NDUFAF8A1L188 74 aa6.35□□□□□ -1.39
ATG4D-208ENST00000588667 KRTAP4-6Q9BYQ5 205 aa6.3□□□□□ -1.4
ATG4D-208ENST00000588667 KRTAP12-4P60329 112 aa6.2□□□□□ -1.42
ATG4D-208ENST00000588667 SYNE1Q8NF91 8797 aaKnown RBP6.16□□□□□ -1.42
ATG4D-208ENST00000588667 KRTAP20-2Q3LI61 65 aa6.14□□□□□ -1.43
ATG4D-208ENST00000588667 GPR98Q8WXG9 6306 aa6.13□□□□□ -1.43
ATG4D-208ENST00000588667 MT1AP04731 61 aa6.12□□□□□ -1.43
ATG4D-208ENST00000588667 KRTAP6-1Q3LI64 71 aa6.05□□□□□ -1.44
ATG4D-208ENST00000588667 AHNAK2Q8IVF2 5795 aa6.04□□□□□ -1.44
ATG4D-208ENST00000588667 KRTAP5-3Q6L8H2 238 aa5.95□□□□□ -1.46
ATG4D-208ENST00000588667 KRTAP9-4Q9BYQ2 154 aa5.86□□□□□ -1.47
ATG4D-208ENST00000588667 KRTAP5-10Q6L8G5 202 aa5.84□□□□□ -1.47
ATG4D-208ENST00000588667 KRTAP5-2Q701N4 177 aa5.8□□□□□ -1.48
ATG4D-208ENST00000588667 KRTAP6-2Q3LI66 62 aa5.71□□□□□ -1.5
ATG4D-208ENST00000588667 A0A0A0MQY5 61 aa5.61□□□□□ -1.51
ATG4D-208ENST00000588667 MT3P25713 68 aa5.58□□□□□ -1.52
ATG4D-208ENST00000588667 KRTAP5-7Q6L8G8 165 aa5.56□□□□□ -1.52
ATG4D-208ENST00000588667 KRTAP4-11Q9BYQ6 195 aa5.52□□□□□ -1.53
ATG4D-208ENST00000588667 H3BS24 57 aa5.41□□□□□ -1.54
ATG4D-208ENST00000588667 OBSCNQ5VST9 7968 aa5.4□□□□□ -1.55
ATG4D-208ENST00000588667 KRTAP5-8O75690 187 aa5.32□□□□□ -1.56
ATG4D-208ENST00000588667 INE1O15225 51 aa5.27□□□□□ -1.57
ATG4D-208ENST00000588667 LCE3DQ9BYE3 92 aa5.17□□□□□ -1.58
ATG4D-208ENST00000588667 KRTAP5-1Q6L8H4 278 aa5.12□□□□□ -1.59
ATG4D-208ENST00000588667 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
ATG4D-208ENST00000588667 MUC5ACP98088 5654 aa5.03□□□□□ -1.6
ATG4D-208ENST00000588667 LCE3EQ5T5B0 92 aa5.02□□□□□ -1.61
ATG4D-208ENST00000588667 KRTAP9-9Q9BYP9 154 aa4.98□□□□□ -1.61
ATG4D-208ENST00000588667 MUC5BQ9HC84 5762 aaPredicted RBP4.91□□□□□ -1.62
ATG4D-208ENST00000588667 AHNAKQ09666 5890 aaKnown RBP4.85□□□□□ -1.63
ATG4D-208ENST00000588667 KRTAP4-2Q9BYR5 136 aa4.72□□□□□ -1.65
ATG4D-208ENST00000588667 LCE1BQ5T7P3 118 aa4.7□□□□□ -1.66
ATG4D-208ENST00000588667 LCE1CQ5T751 118 aa4.68□□□□□ -1.66
ATG4D-208ENST00000588667 PRM1P04553 51 aa4.33□□□□□ -1.72
ATG4D-208ENST00000588667 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.32□□□□□ -1.72
ATG4D-208ENST00000588667 KRTAP5-11Q6L8G4 156 aa4.22□□□□□ -1.73
ATG4D-208ENST00000588667 KRTAP4-12Q9BQ66 201 aa4.12□□□□□ -1.75
ATG4D-208ENST00000588667 LCE1FQ5T754 118 aa4.01□□□□□ -1.77
ATG4D-208ENST00000588667 KRTAP21-2Q3LI59 83 aa3.99□□□□□ -1.77
ATG4D-208ENST00000588667 PHGR1C9JFL3 82 aa3.62□□□□□ -1.83
ATG4D-208ENST00000588667 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
ATG4D-208ENST00000588667 MUC19Q7Z5P9 8384 aa3.3□□□□□ -1.88
ATG4D-208ENST00000588667 KRTAP21-1Q3LI58 79 aa2.63□□□□□ -1.99
ATG4D-208ENST00000588667 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 78.9 ms