RNA–Protein interactions for RNA: ENST00000584437.5

RNF43-208, Transcript of ring finger protein 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF43, Length 5,575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-208ENST00000584437 SYNE1Q8NF91 8797 aaKnown RBP3.8□□□□□ -1.8
RNF43-208ENST00000584437 KRTAP4-3Q9BYR4 195 aa3.8□□□□□ -1.8
RNF43-208ENST00000584437 MT1AP04731 61 aa3.8□□□□□ -1.8
RNF43-208ENST00000584437 KRTAP19-7Q3SYF9 63 aa3.79□□□□□ -1.8
RNF43-208ENST00000584437 BIRC6Q9NR09 4857 aa3.77□□□□□ -1.81
RNF43-208ENST00000584437 LPAP08519 4548 aa3.74□□□□□ -1.81
RNF43-208ENST00000584437 EPPK1P58107 5090 aaKnown RBP3.73□□□□□ -1.81
RNF43-208ENST00000584437 LCE1BQ5T7P3 118 aa3.73□□□□□ -1.81
RNF43-208ENST00000584437 MT4P47944 62 aa3.72□□□□□ -1.81
RNF43-208ENST00000584437 LCE1DQ5T752 114 aa3.71□□□□□ -1.82
RNF43-208ENST00000584437 TNXBP22105 4242 aa3.66□□□□□ -1.82
RNF43-208ENST00000584437 KRTAP4-9Q9BYQ8 210 aa3.65□□□□□ -1.83
RNF43-208ENST00000584437 ABCA13Q86UQ4 5058 aa3.61□□□□□ -1.83
RNF43-208ENST00000584437 KRTAP9-2Q9BYQ4 174 aa3.56□□□□□ -1.84
RNF43-208ENST00000584437 KRTAP9-6A8MVA2 160 aa3.54□□□□□ -1.84
RNF43-208ENST00000584437 KRTAP6-2Q3LI66 62 aa3.53□□□□□ -1.84
RNF43-208ENST00000584437 KRTAP9-6A0A140TA67 174 aa3.52□□□□□ -1.85
RNF43-208ENST00000584437 LCE2AQ5TA79 106 aaPredicted RBP3.51□□□□□ -1.85
RNF43-208ENST00000584437 HMCN2Q8NDA2 5059 aa3.5□□□□□ -1.85
RNF43-208ENST00000584437 RNF213Q63HN8 5207 aa3.49□□□□□ -1.85
RNF43-208ENST00000584437 KRTAP6-1Q3LI64 71 aa3.49□□□□□ -1.85
RNF43-208ENST00000584437 UBR4Q5T4S7 5183 aa3.47□□□□□ -1.85
RNF43-208ENST00000584437 LCE1AQ5T7P2 110 aa3.47□□□□□ -1.85
RNF43-208ENST00000584437 KRTAP9-4Q9BYQ2 154 aa3.46□□□□□ -1.86
RNF43-208ENST00000584437 LCE5AQ5TCM9 118 aa3.46□□□□□ -1.86
RNF43-208ENST00000584437 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
RNF43-208ENST00000584437 FAT4Q6V0I7 4981 aa3.43□□□□□ -1.86
RNF43-208ENST00000584437 KRTAP9-7A8MTY7 169 aa3.37□□□□□ -1.87
RNF43-208ENST00000584437 MUC2Q02817 5179 aa3.31□□□□□ -1.88
RNF43-208ENST00000584437 LCE4AQ5TA78 99 aa3.29□□□□□ -1.88
RNF43-208ENST00000584437 KRTAP6-3Q3LI67 103 aa3.25□□□□□ -1.89
RNF43-208ENST00000584437 SYNE2Q8WXH0 6885 aaKnown RBP3.22□□□□□ -1.89
RNF43-208ENST00000584437 KRTAP20-1Q3LI63 56 aa3.22□□□□□ -1.89
RNF43-208ENST00000584437 KRTAP2-2Q9BYT5 123 aa3.22□□□□□ -1.89
RNF43-208ENST00000584437 FSIP2Q5CZC0 6907 aa3.21□□□□□ -1.9
RNF43-208ENST00000584437 LCE1CQ5T751 118 aa3.14□□□□□ -1.91
RNF43-208ENST00000584437 LCE1EQ5T753 118 aa3.14□□□□□ -1.91
RNF43-208ENST00000584437 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
RNF43-208ENST00000584437 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.05□□□□□ -1.92
RNF43-208ENST00000584437 USH2AO75445 5202 aa3.02□□□□□ -1.93
RNF43-208ENST00000584437 FCGBPQ9Y6R7 5405 aaPredicted RBP3.02□□□□□ -1.93
RNF43-208ENST00000584437 KRTAP4-11Q9BYQ6 195 aa2.93□□□□□ -1.94
RNF43-208ENST00000584437 DSTQ03001 7570 aaKnown RBP2.84□□□□□ -1.96
RNF43-208ENST00000584437 KMT2DO14686 5537 aa2.84□□□□□ -1.96
RNF43-208ENST00000584437 KRTAP9-9Q9BYP9 154 aa2.82□□□□□ -1.96
RNF43-208ENST00000584437 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
RNF43-208ENST00000584437 KRTAP5-9P26371 169 aa2.78□□□□□ -1.96
RNF43-208ENST00000584437 KRTAP20-2Q3LI61 65 aa2.72□□□□□ -1.97
RNF43-208ENST00000584437 MACF1Q9UPN3 7388 aaKnown RBP2.71□□□□□ -1.98
RNF43-208ENST00000584437 KRTAP5-5Q701N2 237 aaPredicted RBP2.7□□□□□ -1.98
RNF43-208ENST00000584437 MUC12Q9UKN1 5478 aa2.7□□□□□ -1.98
RNF43-208ENST00000584437 KRTAP4-6Q9BYQ5 205 aa2.69□□□□□ -1.98
RNF43-208ENST00000584437 SSPOA2VEC9 5147 aa2.67□□□□□ -1.98
RNF43-208ENST00000584437 NEBP20929 6669 aa2.61□□□□□ -1.99
RNF43-208ENST00000584437 GPR98Q8WXG9 6306 aa2.61□□□□□ -1.99
RNF43-208ENST00000584437 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
RNF43-208ENST00000584437 MDN1Q9NU22 5596 aa2.52□□□□□ -2.01
RNF43-208ENST00000584437 KRTAP5-4Q6L8H1 288 aa2.51□□□□□ -2.01
RNF43-208ENST00000584437 KRTAP4-12Q9BQ66 201 aa2.44□□□□□ -2.02
RNF43-208ENST00000584437 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
RNF43-208ENST00000584437 MUC5ACP98088 5654 aa2.2□□□□□ -2.06
RNF43-208ENST00000584437 KRTAP5-3Q6L8H2 238 aa2.19□□□□□ -2.06
RNF43-208ENST00000584437 KRTAP5-10Q6L8G5 202 aa2.14□□□□□ -2.07
RNF43-208ENST00000584437 HMCN1Q96RW7 5635 aa2.11□□□□□ -2.07
RNF43-208ENST00000584437 AHNAK2Q8IVF2 5795 aa2.04□□□□□ -2.08
RNF43-208ENST00000584437 KRTAP5-2Q701N4 177 aa1.96□□□□□ -2.1
RNF43-208ENST00000584437 KRTAP5-8O75690 187 aa1.92□□□□□ -2.1
RNF43-208ENST00000584437 MUC5BQ9HC84 5762 aaPredicted RBP1.87□□□□□ -2.11
RNF43-208ENST00000584437 KRTAP5-11Q6L8G4 156 aa1.85□□□□□ -2.11
RNF43-208ENST00000584437 KRTAP5-1Q6L8H4 278 aa1.83□□□□□ -2.12
RNF43-208ENST00000584437 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
RNF43-208ENST00000584437 PHGR1C9JFL3 82 aa1.75□□□□□ -2.13
RNF43-208ENST00000584437 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
RNF43-208ENST00000584437 AHNAKQ09666 5890 aaKnown RBP1.71□□□□□ -2.14
RNF43-208ENST00000584437 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.64□□□□□ -2.15
RNF43-208ENST00000584437 KRTAP5-7Q6L8G8 165 aa1.6□□□□□ -2.15
RNF43-208ENST00000584437 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 12.1 ms