RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 KRTAP4-8Q9BYQ9 185 aa3.46□□□□□ -1.86
SS18-220ENST00000582092 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
SS18-220ENST00000582092 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
SS18-220ENST00000582092 NEBP20929 6669 aa3.43□□□□□ -1.86
SS18-220ENST00000582092 LCE1AQ5T7P2 110 aa3.41□□□□□ -1.86
SS18-220ENST00000582092 NDUFAF8A1L188 74 aa3.39□□□□□ -1.87
SS18-220ENST00000582092 SPRR2DP22532 72 aa3.39□□□□□ -1.87
SS18-220ENST00000582092 MUC12Q9UKN1 5478 aa3.39□□□□□ -1.87
SS18-220ENST00000582092 KMT2DO14686 5537 aa3.38□□□□□ -1.87
SS18-220ENST00000582092 KRTAP19-4Q3LI73 84 aa3.38□□□□□ -1.87
SS18-220ENST00000582092 SPRR5A0A1B0GTR4 108 aa3.34□□□□□ -1.87
SS18-220ENST00000582092 KRTAP19-7Q3SYF9 63 aa3.34□□□□□ -1.87
SS18-220ENST00000582092 KRTAP2-2Q9BYT5 123 aa3.34□□□□□ -1.87
SS18-220ENST00000582092 KRTAP2-1Q9BYU5 128 aa3.34□□□□□ -1.87
SS18-220ENST00000582092 LCE3CQ5T5A8 94 aa3.32□□□□□ -1.88
SS18-220ENST00000582092 MT1EP04732 61 aa3.31□□□□□ -1.88
SS18-220ENST00000582092 LCE3BQ5TA77 95 aa3.27□□□□□ -1.89
SS18-220ENST00000582092 MT1LQ93083 61 aa3.27□□□□□ -1.89
SS18-220ENST00000582092 MDN1Q9NU22 5596 aa3.25□□□□□ -1.89
SS18-220ENST00000582092 MT1GP13640 62 aa3.21□□□□□ -1.9
SS18-220ENST00000582092 KRTAP19-3Q7Z4W3 81 aa3.21□□□□□ -1.9
SS18-220ENST00000582092 LCE5AQ5TCM9 118 aa3.19□□□□□ -1.9
SS18-220ENST00000582092 KRTAP4-7Q9BYR0 210 aa3.15□□□□□ -1.91
SS18-220ENST00000582092 H3BS24 57 aa3.13□□□□□ -1.91
SS18-220ENST00000582092 MT1MQ8N339 61 aa3.13□□□□□ -1.91
SS18-220ENST00000582092 A0A0A0MQY5 61 aa3.11□□□□□ -1.91
SS18-220ENST00000582092 KRTAP4-3Q9BYR4 195 aa3.04□□□□□ -1.92
SS18-220ENST00000582092 KRTAP9-6A8MVA2 160 aa3.03□□□□□ -1.92
SS18-220ENST00000582092 DSTQ03001 7570 aaKnown RBP3.03□□□□□ -1.92
SS18-220ENST00000582092 LCE4AQ5TA78 99 aa3.01□□□□□ -1.93
SS18-220ENST00000582092 KRTAP4-9Q9BYQ8 210 aa2.99□□□□□ -1.93
SS18-220ENST00000582092 LOC100996750A0A140TA64 210 aa2.96□□□□□ -1.94
SS18-220ENST00000582092 LCE1DQ5T752 114 aa2.94□□□□□ -1.94
SS18-220ENST00000582092 MT4P47944 62 aa2.93□□□□□ -1.94
SS18-220ENST00000582092 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
SS18-220ENST00000582092 INE1O15225 51 aa2.83□□□□□ -1.96
SS18-220ENST00000582092 KRTAP4-6Q9BYQ5 205 aa2.81□□□□□ -1.96
SS18-220ENST00000582092 MT1AP04731 61 aa2.8□□□□□ -1.96
SS18-220ENST00000582092 KRTAP12-4P60329 112 aa2.8□□□□□ -1.96
SS18-220ENST00000582092 KRTAP5-5Q701N2 237 aaPredicted RBP2.78□□□□□ -1.96
SS18-220ENST00000582092 KRTAP20-2Q3LI61 65 aa2.74□□□□□ -1.97
SS18-220ENST00000582092 KRTAP6-1Q3LI64 71 aa2.74□□□□□ -1.97
SS18-220ENST00000582092 HMCN1Q96RW7 5635 aa2.72□□□□□ -1.97
SS18-220ENST00000582092 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
SS18-220ENST00000582092 GPR98Q8WXG9 6306 aa2.68□□□□□ -1.98
SS18-220ENST00000582092 KRTAP5-3Q6L8H2 238 aa2.67□□□□□ -1.98
SS18-220ENST00000582092 KRTAP9-4Q9BYQ2 154 aa2.66□□□□□ -1.98
SS18-220ENST00000582092 SYNE1Q8NF91 8797 aaKnown RBP2.61□□□□□ -1.99
SS18-220ENST00000582092 KRTAP5-7Q6L8G8 165 aa2.61□□□□□ -1.99
SS18-220ENST00000582092 AHNAK2Q8IVF2 5795 aa2.6□□□□□ -1.99
SS18-220ENST00000582092 MT3P25713 68 aa2.59□□□□□ -1.99
SS18-220ENST00000582092 KRTAP6-2Q3LI66 62 aa2.54□□□□□ -2
SS18-220ENST00000582092 LCE3DQ9BYE3 92 aa2.54□□□□□ -2
SS18-220ENST00000582092 KRTAP5-2Q701N4 177 aa2.53□□□□□ -2
SS18-220ENST00000582092 KRTAP4-11Q9BYQ6 195 aa2.5□□□□□ -2.01
SS18-220ENST00000582092 LCE3EQ5T5B0 92 aa2.49□□□□□ -2.01
SS18-220ENST00000582092 KRTAP5-8O75690 187 aa2.4□□□□□ -2.03
SS18-220ENST00000582092 KRTAP9-9Q9BYP9 154 aa2.34□□□□□ -2.03
SS18-220ENST00000582092 OBSCNQ5VST9 7968 aa2.31□□□□□ -2.04
SS18-220ENST00000582092 KRTAP5-1Q6L8H4 278 aa2.26□□□□□ -2.05
SS18-220ENST00000582092 LCE1EQ5T753 118 aa2.23□□□□□ -2.05
SS18-220ENST00000582092 PRM1P04553 51 aa2.19□□□□□ -2.06
SS18-220ENST00000582092 MUC5ACP98088 5654 aa2.15□□□□□ -2.07
SS18-220ENST00000582092 LCE1BQ5T7P3 118 aa2.11□□□□□ -2.07
SS18-220ENST00000582092 MUC5BQ9HC84 5762 aaPredicted RBP2.08□□□□□ -2.08
SS18-220ENST00000582092 AHNAKQ09666 5890 aaKnown RBP2.06□□□□□ -2.08
SS18-220ENST00000582092 LCE1CQ5T751 118 aa2.06□□□□□ -2.08
SS18-220ENST00000582092 KRTAP4-2Q9BYR5 136 aa2.05□□□□□ -2.08
SS18-220ENST00000582092 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.87□□□□□ -2.11
SS18-220ENST00000582092 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
SS18-220ENST00000582092 KRTAP4-12Q9BQ66 201 aa1.85□□□□□ -2.11
SS18-220ENST00000582092 LCE1FQ5T754 118 aa1.84□□□□□ -2.11
SS18-220ENST00000582092 KRTAP21-2Q3LI59 83 aa1.76□□□□□ -2.13
SS18-220ENST00000582092 KRTAP4-4Q9BYR3 166 aa1.62□□□□□ -2.15
SS18-220ENST00000582092 PHGR1C9JFL3 82 aa1.6□□□□□ -2.15
SS18-220ENST00000582092 MUC19Q7Z5P9 8384 aa1.43□□□□□ -2.18
SS18-220ENST00000582092 KRTAP21-1Q3LI58 79 aa1.31□□□□□ -2.2
SS18-220ENST00000582092 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 94.1 ms