RNA–Protein interactions for RNA: ENST00000578519.5

SKA2-204, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3

Gene SKA2, Length 894 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-204ENST00000578519 KRTAP5-9P26371 169 aa4.39□□□□□ -1.71
SKA2-204ENST00000578519 KRTAP8-1Q8IUC2 63 aa4.39□□□□□ -1.71
SKA2-204ENST00000578519 NDUFAF8A1L188 74 aa4.36□□□□□ -1.71
SKA2-204ENST00000578519 KRTAP5-1Q6L8H4 278 aa4.32□□□□□ -1.72
SKA2-204ENST00000578519 LUZP6Q538Z0 58 aa4.31□□□□□ -1.72
SKA2-204ENST00000578519 KRTAP5-4Q6L8H1 288 aa4.3□□□□□ -1.72
SKA2-204ENST00000578519 KRTAP12-3P60328 96 aa4.29□□□□□ -1.72
SKA2-204ENST00000578519 KRTAP19-6Q3LI70 58 aa4.28□□□□□ -1.72
SKA2-204ENST00000578519 KRTAP4-4Q9BYR3 166 aa4.22□□□□□ -1.73
SKA2-204ENST00000578519 LCE1AQ5T7P2 110 aa4.19□□□□□ -1.74
SKA2-204ENST00000578519 SPRR5A0A1B0GTR4 108 aa4.17□□□□□ -1.74
SKA2-204ENST00000578519 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
SKA2-204ENST00000578519 KRTAP19-5Q3LI72 72 aa4.15□□□□□ -1.75
SKA2-204ENST00000578519 USH2AO75445 5202 aa4.12□□□□□ -1.75
SKA2-204ENST00000578519 LCE1EQ5T753 118 aa4.09□□□□□ -1.75
SKA2-204ENST00000578519 KRTAP19-7Q3SYF9 63 aa4.02□□□□□ -1.77
SKA2-204ENST00000578519 LCE3CQ5T5A8 94 aa4.02□□□□□ -1.77
SKA2-204ENST00000578519 SSPOA2VEC9 5147 aa3.98□□□□□ -1.77
SKA2-204ENST00000578519 MT1EP04732 61 aa3.98□□□□□ -1.77
SKA2-204ENST00000578519 MT1LQ93083 61 aa3.93□□□□□ -1.78
SKA2-204ENST00000578519 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
SKA2-204ENST00000578519 CRCT1Q9UGL9 99 aa3.91□□□□□ -1.78
SKA2-204ENST00000578519 MT1GP13640 62 aa3.85□□□□□ -1.79
SKA2-204ENST00000578519 KRTAP19-3Q7Z4W3 81 aa3.83□□□□□ -1.8
SKA2-204ENST00000578519 SPRR2FQ96RM1 72 aa3.81□□□□□ -1.8
SKA2-204ENST00000578519 FCGBPQ9Y6R7 5405 aaPredicted RBP3.79□□□□□ -1.8
SKA2-204ENST00000578519 KMT2DO14686 5537 aa3.75□□□□□ -1.81
SKA2-204ENST00000578519 INE1O15225 51 aa3.74□□□□□ -1.81
SKA2-204ENST00000578519 MT1MQ8N339 61 aa3.74□□□□□ -1.81
SKA2-204ENST00000578519 KRTAP5-2Q701N4 177 aa3.71□□□□□ -1.82
SKA2-204ENST00000578519 OBSCNQ5VST9 7968 aa3.7□□□□□ -1.82
SKA2-204ENST00000578519 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
SKA2-204ENST00000578519 KRTAP9-6A8MVA2 160 aa3.66□□□□□ -1.82
SKA2-204ENST00000578519 KRTAP6-3Q3LI67 103 aa3.63□□□□□ -1.83
SKA2-204ENST00000578519 KRTAP4-3Q9BYR4 195 aa3.62□□□□□ -1.83
SKA2-204ENST00000578519 SPRR2EP22531 72 aa3.6□□□□□ -1.83
SKA2-204ENST00000578519 SPRR2BP35325 72 aa3.6□□□□□ -1.83
SKA2-204ENST00000578519 SPRR2AP35326 72 aa3.6□□□□□ -1.83
SKA2-204ENST00000578519 KRTAP2-3P0C7H8 128 aa3.56□□□□□ -1.84
SKA2-204ENST00000578519 KRTAP2-4Q9BYR9 128 aa3.56□□□□□ -1.84
SKA2-204ENST00000578519 KRTAP2-1Q9BYU5 128 aa3.56□□□□□ -1.84
SKA2-204ENST00000578519 MACF1Q9UPN3 7388 aaKnown RBP3.51□□□□□ -1.85
SKA2-204ENST00000578519 SPRR2DP22532 72 aa3.47□□□□□ -1.85
SKA2-204ENST00000578519 MUC12Q9UKN1 5478 aa3.43□□□□□ -1.86
SKA2-204ENST00000578519 MT3P25713 68 aa3.39□□□□□ -1.87
SKA2-204ENST00000578519 MT1AP04731 61 aa3.38□□□□□ -1.87
SKA2-204ENST00000578519 SYNE2Q8WXH0 6885 aaKnown RBP3.33□□□□□ -1.88
SKA2-204ENST00000578519 KRTAP5-5Q701N2 237 aaPredicted RBP3.31□□□□□ -1.88
SKA2-204ENST00000578519 KRTAP6-1Q3LI64 71 aa3.27□□□□□ -1.89
SKA2-204ENST00000578519 MDN1Q9NU22 5596 aa3.23□□□□□ -1.89
SKA2-204ENST00000578519 LCE1FQ5T754 118 aa3.22□□□□□ -1.89
SKA2-204ENST00000578519 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
SKA2-204ENST00000578519 KRTAP5-8O75690 187 aa3.18□□□□□ -1.9
SKA2-204ENST00000578519 DSTQ03001 7570 aaKnown RBP3.14□□□□□ -1.91
SKA2-204ENST00000578519 NEBP20929 6669 aa3.09□□□□□ -1.91
SKA2-204ENST00000578519 LCE3DQ9BYE3 92 aa3.08□□□□□ -1.92
SKA2-204ENST00000578519 KRTAP20-1Q3LI63 56 aa3.04□□□□□ -1.92
SKA2-204ENST00000578519 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
SKA2-204ENST00000578519 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
SKA2-204ENST00000578519 SYNE1Q8NF91 8797 aaKnown RBP2.97□□□□□ -1.93
SKA2-204ENST00000578519 MT4P47944 62 aa2.95□□□□□ -1.94
SKA2-204ENST00000578519 KRTAP20-2Q3LI61 65 aa2.92□□□□□ -1.94
SKA2-204ENST00000578519 PRM1P04553 51 aa2.64□□□□□ -1.99
SKA2-204ENST00000578519 HMCN1Q96RW7 5635 aa2.62□□□□□ -1.99
SKA2-204ENST00000578519 LCE1CQ5T751 118 aa2.59□□□□□ -1.99
SKA2-204ENST00000578519 LCE1BQ5T7P3 118 aa2.59□□□□□ -1.99
SKA2-204ENST00000578519 KRTAP5-10Q6L8G5 202 aa2.42□□□□□ -2.02
SKA2-204ENST00000578519 KRTAP5-7Q6L8G8 165 aa2.37□□□□□ -2.03
SKA2-204ENST00000578519 GPR98Q8WXG9 6306 aa2.33□□□□□ -2.04
SKA2-204ENST00000578519 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
SKA2-204ENST00000578519 AHNAK2Q8IVF2 5795 aa2.27□□□□□ -2.05
SKA2-204ENST00000578519 MUC5ACP98088 5654 aa2.26□□□□□ -2.05
SKA2-204ENST00000578519 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
SKA2-204ENST00000578519 MUC5BQ9HC84 5762 aaPredicted RBP1.92□□□□□ -2.1
SKA2-204ENST00000578519 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
SKA2-204ENST00000578519 PHGR1C9JFL3 82 aa1.81□□□□□ -2.12
SKA2-204ENST00000578519 KRTAP21-1Q3LI58 79 aa1.65□□□□□ -2.15
SKA2-204ENST00000578519 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 114.1 ms