RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 LCE2DQ5TA82 110 aaPredicted RBP7.64□□□□□ -1.19
VPS53-211ENST00000571805 KRTAP9-2Q9BYQ4 174 aa7.59□□□□□ -1.19
VPS53-211ENST00000571805 FCGBPQ9Y6R7 5405 aaPredicted RBP7.51□□□□□ -1.21
VPS53-211ENST00000571805 KRTAP4-3Q9BYR4 195 aa7.48□□□□□ -1.21
VPS53-211ENST00000571805 MUC12Q9UKN1 5478 aa7.42□□□□□ -1.22
VPS53-211ENST00000571805 LOC100996750A0A140TA64 210 aa7.42□□□□□ -1.22
VPS53-211ENST00000571805 KRTAP19-3Q7Z4W3 81 aa7.42□□□□□ -1.22
VPS53-211ENST00000571805 MT1MQ8N339 61 aa7.41□□□□□ -1.22
VPS53-211ENST00000571805 MT1GP13640 62 aa7.4□□□□□ -1.23
VPS53-211ENST00000571805 CRCT1Q9UGL9 99 aa7.26□□□□□ -1.25
VPS53-211ENST00000571805 LCE5AQ5TCM9 118 aa7.19□□□□□ -1.26
VPS53-211ENST00000571805 SPRR2FQ96RM1 72 aa7.15□□□□□ -1.27
VPS53-211ENST00000571805 MACF1Q9UPN3 7388 aaKnown RBP7.12□□□□□ -1.27
VPS53-211ENST00000571805 KRTAP9-6A0A140TA67 174 aa7.03□□□□□ -1.28
VPS53-211ENST00000571805 DSTQ03001 7570 aaKnown RBP7□□□□□ -1.29
VPS53-211ENST00000571805 SYNE2Q8WXH0 6885 aaKnown RBP6.99□□□□□ -1.29
VPS53-211ENST00000571805 KRTAP12-4P60329 112 aa6.8□□□□□ -1.32
VPS53-211ENST00000571805 LCE3BQ5TA77 95 aa6.76□□□□□ -1.33
VPS53-211ENST00000571805 MDN1Q9NU22 5596 aa6.76□□□□□ -1.33
VPS53-211ENST00000571805 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.73□□□□□ -1.33
VPS53-211ENST00000571805 KRTAP5-9P26371 169 aa6.72□□□□□ -1.33
VPS53-211ENST00000571805 KRTAP6-1Q3LI64 71 aa6.72□□□□□ -1.33
VPS53-211ENST00000571805 LCE1AQ5T7P2 110 aa6.72□□□□□ -1.33
VPS53-211ENST00000571805 MT1AP04731 61 aa6.66□□□□□ -1.34
VPS53-211ENST00000571805 KRTAP4-9Q9BYQ8 210 aa6.64□□□□□ -1.35
VPS53-211ENST00000571805 KRTAP5-5Q701N2 237 aaPredicted RBP6.59□□□□□ -1.35
VPS53-211ENST00000571805 SPRR2EP22531 72 aa6.54□□□□□ -1.36
VPS53-211ENST00000571805 SPRR2BP35325 72 aa6.54□□□□□ -1.36
VPS53-211ENST00000571805 SPRR2AP35326 72 aa6.54□□□□□ -1.36
VPS53-211ENST00000571805 SYNE1Q8NF91 8797 aaKnown RBP6.49□□□□□ -1.37
VPS53-211ENST00000571805 KRTAP6-3Q3LI67 103 aa6.44□□□□□ -1.38
VPS53-211ENST00000571805 KRTAP9-7A8MTY7 169 aa6.43□□□□□ -1.38
VPS53-211ENST00000571805 LCE3DQ9BYE3 92 aa6.4□□□□□ -1.39
VPS53-211ENST00000571805 LCE3EQ5T5B0 92 aa6.31□□□□□ -1.4
VPS53-211ENST00000571805 KRTAP9-4Q9BYQ2 154 aa6.28□□□□□ -1.4
VPS53-211ENST00000571805 SPRR2DP22532 72 aa6.25□□□□□ -1.41
VPS53-211ENST00000571805 NEBP20929 6669 aa6.19□□□□□ -1.42
VPS53-211ENST00000571805 KRTAP6-2Q3LI66 62 aa6.02□□□□□ -1.45
VPS53-211ENST00000571805 PRM1P04553 51 aa5.99□□□□□ -1.45
VPS53-211ENST00000571805 MT3P25713 68 aa5.97□□□□□ -1.45
VPS53-211ENST00000571805 KRTAP5-4Q6L8H1 288 aa5.82□□□□□ -1.48
VPS53-211ENST00000571805 OBSCNQ5VST9 7968 aa5.7□□□□□ -1.5
VPS53-211ENST00000571805 KRTAP20-1Q3LI63 56 aa5.65□□□□□ -1.51
VPS53-211ENST00000571805 KRTAP4-6Q9BYQ5 205 aa5.59□□□□□ -1.51
VPS53-211ENST00000571805 KRTAP2-2Q9BYT5 123 aa5.55□□□□□ -1.52
VPS53-211ENST00000571805 MT4P47944 62 aa5.51□□□□□ -1.53
VPS53-211ENST00000571805 KRTAP20-2Q3LI61 65 aa5.45□□□□□ -1.54
VPS53-211ENST00000571805 KRTAP5-2Q701N4 177 aa5.44□□□□□ -1.54
VPS53-211ENST00000571805 LCE4AQ5TA78 99 aa5.44□□□□□ -1.54
VPS53-211ENST00000571805 HMCN1Q96RW7 5635 aa5.28□□□□□ -1.56
VPS53-211ENST00000571805 LCE1DQ5T752 114 aa5.23□□□□□ -1.57
VPS53-211ENST00000571805 KRTAP5-3Q6L8H2 238 aa5.21□□□□□ -1.57
VPS53-211ENST00000571805 MUC5ACP98088 5654 aa5.05□□□□□ -1.6
VPS53-211ENST00000571805 LCE1EQ5T753 118 aa4.93□□□□□ -1.62
VPS53-211ENST00000571805 LCE1BQ5T7P3 118 aa4.78□□□□□ -1.64
VPS53-211ENST00000571805 KRTAP5-10Q6L8G5 202 aa4.71□□□□□ -1.65
VPS53-211ENST00000571805 KRTAP5-1Q6L8H4 278 aa4.7□□□□□ -1.66
VPS53-211ENST00000571805 KRTAP4-2Q9BYR5 136 aa4.67□□□□□ -1.66
VPS53-211ENST00000571805 LCE1CQ5T751 118 aa4.65□□□□□ -1.67
VPS53-211ENST00000571805 AHNAK2Q8IVF2 5795 aa4.63□□□□□ -1.67
VPS53-211ENST00000571805 KRTAP4-11Q9BYQ6 195 aa4.53□□□□□ -1.68
VPS53-211ENST00000571805 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.41□□□□□ -1.7
VPS53-211ENST00000571805 GPR98Q8WXG9 6306 aa4.38□□□□□ -1.71
VPS53-211ENST00000571805 KRTAP21-2Q3LI59 83 aa4.36□□□□□ -1.71
VPS53-211ENST00000571805 KRTAP5-8O75690 187 aa4.34□□□□□ -1.71
VPS53-211ENST00000571805 KRTAP5-7Q6L8G8 165 aa4.28□□□□□ -1.72
VPS53-211ENST00000571805 KRTAP5-11Q6L8G4 156 aa3.99□□□□□ -1.77
VPS53-211ENST00000571805 KRTAP4-4Q9BYR3 166 aa3.93□□□□□ -1.78
VPS53-211ENST00000571805 KRTAP9-9Q9BYP9 154 aa3.87□□□□□ -1.79
VPS53-211ENST00000571805 MUC5BQ9HC84 5762 aaPredicted RBP3.86□□□□□ -1.79
VPS53-211ENST00000571805 KRTAP21-1Q3LI58 79 aa3.8□□□□□ -1.8
VPS53-211ENST00000571805 KRTAP4-12Q9BQ66 201 aa3.75□□□□□ -1.81
VPS53-211ENST00000571805 MUC19Q7Z5P9 8384 aa3.61□□□□□ -1.83
VPS53-211ENST00000571805 AHNAKQ09666 5890 aaKnown RBP3.51□□□□□ -1.85
VPS53-211ENST00000571805 PHGR1C9JFL3 82 aa3.45□□□□□ -1.86
VPS53-211ENST00000571805 LCE1FQ5T754 118 aa3.28□□□□□ -1.88
VPS53-211ENST00000571805 MUC16Q8WXI7 14507 aa2.32□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 11.7 ms