RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 KRTAP4-3Q9BYR4 195 aa5.75□□□□□ -1.49
SCARF1-205ENST00000571272 FCGBPQ9Y6R7 5405 aaPredicted RBP5.68□□□□□ -1.5
SCARF1-205ENST00000571272 MUC12Q9UKN1 5478 aa5.68□□□□□ -1.5
SCARF1-205ENST00000571272 MT1GP13640 62 aa5.67□□□□□ -1.5
SCARF1-205ENST00000571272 KRTAP19-6Q3LI70 58 aa5.65□□□□□ -1.51
SCARF1-205ENST00000571272 CRCT1Q9UGL9 99 aa5.62□□□□□ -1.51
SCARF1-205ENST00000571272 LCE2DQ5TA82 110 aaPredicted RBP5.61□□□□□ -1.51
SCARF1-205ENST00000571272 DSTQ03001 7570 aaKnown RBP5.57□□□□□ -1.52
SCARF1-205ENST00000571272 MT1MQ8N339 61 aa5.55□□□□□ -1.52
SCARF1-205ENST00000571272 KRTAP19-3Q7Z4W3 81 aa5.52□□□□□ -1.53
SCARF1-205ENST00000571272 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
SCARF1-205ENST00000571272 SYNE1Q8NF91 8797 aaKnown RBP5.32□□□□□ -1.56
SCARF1-205ENST00000571272 SPRR2FQ96RM1 72 aa5.3□□□□□ -1.56
SCARF1-205ENST00000571272 LCE3BQ5TA77 95 aa5.3□□□□□ -1.56
SCARF1-205ENST00000571272 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
SCARF1-205ENST00000571272 KRTAP4-9Q9BYQ8 210 aa5.26□□□□□ -1.57
SCARF1-205ENST00000571272 MACF1Q9UPN3 7388 aaKnown RBP5.17□□□□□ -1.58
SCARF1-205ENST00000571272 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
SCARF1-205ENST00000571272 KRTAP6-1Q3LI64 71 aa5.11□□□□□ -1.59
SCARF1-205ENST00000571272 SYNE2Q8WXH0 6885 aaKnown RBP5.08□□□□□ -1.6
SCARF1-205ENST00000571272 MDN1Q9NU22 5596 aa5.05□□□□□ -1.6
SCARF1-205ENST00000571272 MT1AP04731 61 aa5.03□□□□□ -1.6
SCARF1-205ENST00000571272 KRTAP9-2Q9BYQ4 174 aa4.99□□□□□ -1.61
SCARF1-205ENST00000571272 LCE3DQ9BYE3 92 aa4.99□□□□□ -1.61
SCARF1-205ENST00000571272 LCE3EQ5T5B0 92 aa4.93□□□□□ -1.62
SCARF1-205ENST00000571272 KRTAP9-7A8MTY7 169 aa4.9□□□□□ -1.62
SCARF1-205ENST00000571272 KRTAP5-5Q701N2 237 aaPredicted RBP4.87□□□□□ -1.63
SCARF1-205ENST00000571272 LCE1AQ5T7P2 110 aa4.86□□□□□ -1.63
SCARF1-205ENST00000571272 PRM1P04553 51 aa4.83□□□□□ -1.64
SCARF1-205ENST00000571272 SPRR2EP22531 72 aa4.74□□□□□ -1.65
SCARF1-205ENST00000571272 SPRR2BP35325 72 aa4.74□□□□□ -1.65
SCARF1-205ENST00000571272 SPRR2AP35326 72 aa4.74□□□□□ -1.65
SCARF1-205ENST00000571272 KRTAP5-9P26371 169 aa4.72□□□□□ -1.65
SCARF1-205ENST00000571272 KRTAP9-4Q9BYQ2 154 aa4.68□□□□□ -1.66
SCARF1-205ENST00000571272 KRTAP6-2Q3LI66 62 aa4.64□□□□□ -1.67
SCARF1-205ENST00000571272 SPRR2DP22532 72 aa4.51□□□□□ -1.69
SCARF1-205ENST00000571272 MT3P25713 68 aa4.48□□□□□ -1.69
SCARF1-205ENST00000571272 KRTAP6-3Q3LI67 103 aa4.4□□□□□ -1.7
SCARF1-205ENST00000571272 KRTAP9-6A0A140TA67 174 aa4.37□□□□□ -1.71
SCARF1-205ENST00000571272 KRTAP2-2Q9BYT5 123 aa4.24□□□□□ -1.73
SCARF1-205ENST00000571272 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.19□□□□□ -1.74
SCARF1-205ENST00000571272 KRTAP5-4Q6L8H1 288 aa4.13□□□□□ -1.75
SCARF1-205ENST00000571272 KRTAP4-6Q9BYQ5 205 aa4.11□□□□□ -1.75
SCARF1-205ENST00000571272 MT4P47944 62 aa4.06□□□□□ -1.76
SCARF1-205ENST00000571272 NEBP20929 6669 aa3.94□□□□□ -1.78
SCARF1-205ENST00000571272 KRTAP20-2Q3LI61 65 aa3.94□□□□□ -1.78
SCARF1-205ENST00000571272 KRTAP5-2Q701N4 177 aa3.9□□□□□ -1.79
SCARF1-205ENST00000571272 MUC5ACP98088 5654 aa3.87□□□□□ -1.79
SCARF1-205ENST00000571272 HMCN1Q96RW7 5635 aa3.84□□□□□ -1.79
SCARF1-205ENST00000571272 LCE1DQ5T752 114 aa3.81□□□□□ -1.8
SCARF1-205ENST00000571272 LCE1EQ5T753 118 aa3.81□□□□□ -1.8
SCARF1-205ENST00000571272 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
SCARF1-205ENST00000571272 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
SCARF1-205ENST00000571272 LCE1BQ5T7P3 118 aa3.69□□□□□ -1.82
SCARF1-205ENST00000571272 KRTAP4-11Q9BYQ6 195 aa3.66□□□□□ -1.82
SCARF1-205ENST00000571272 KRTAP5-10Q6L8G5 202 aa3.61□□□□□ -1.83
SCARF1-205ENST00000571272 KRTAP20-1Q3LI63 56 aa3.61□□□□□ -1.83
SCARF1-205ENST00000571272 KRTAP5-1Q6L8H4 278 aa3.5□□□□□ -1.85
SCARF1-205ENST00000571272 KRTAP4-2Q9BYR5 136 aa3.44□□□□□ -1.86
SCARF1-205ENST00000571272 LCE1FQ5T754 118 aa3.38□□□□□ -1.87
SCARF1-205ENST00000571272 LCE1CQ5T751 118 aa3.38□□□□□ -1.87
SCARF1-205ENST00000571272 MUC19Q7Z5P9 8384 aa3.29□□□□□ -1.88
SCARF1-205ENST00000571272 KRTAP21-2Q3LI59 83 aa3.26□□□□□ -1.89
SCARF1-205ENST00000571272 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.17□□□□□ -1.9
SCARF1-205ENST00000571272 KRTAP4-4Q9BYR3 166 aa3.1□□□□□ -1.91
SCARF1-205ENST00000571272 KRTAP5-8O75690 187 aa3.05□□□□□ -1.92
SCARF1-205ENST00000571272 KRTAP21-1Q3LI58 79 aa2.99□□□□□ -1.93
SCARF1-205ENST00000571272 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
SCARF1-205ENST00000571272 AHNAK2Q8IVF2 5795 aa2.97□□□□□ -1.93
SCARF1-205ENST00000571272 MUC5BQ9HC84 5762 aaPredicted RBP2.96□□□□□ -1.94
SCARF1-205ENST00000571272 KRTAP5-7Q6L8G8 165 aa2.95□□□□□ -1.94
SCARF1-205ENST00000571272 KRTAP5-11Q6L8G4 156 aa2.87□□□□□ -1.95
SCARF1-205ENST00000571272 KRTAP4-12Q9BQ66 201 aa2.85□□□□□ -1.95
SCARF1-205ENST00000571272 KRTAP9-9Q9BYP9 154 aa2.62□□□□□ -1.99
SCARF1-205ENST00000571272 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
SCARF1-205ENST00000571272 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
SCARF1-205ENST00000571272 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 70 ms