RNA–Protein interactions for RNA: ENST00000569687.1

SF3B3-213, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 333 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-213ENST00000569687 KRTAP10-12P60413 245 aa2.19□□□□□ -2.06
SF3B3-213ENST00000569687 MT1XP80297 61 aa2.19□□□□□ -2.06
SF3B3-213ENST00000569687 LCE3CQ5T5A8 94 aa2.16□□□□□ -2.06
SF3B3-213ENST00000569687 KRTAP8-1Q8IUC2 63 aa2.15□□□□□ -2.07
SF3B3-213ENST00000569687 PRO2289Q9P1D8 64 aa2.15□□□□□ -2.07
SF3B3-213ENST00000569687 LCE3AQ5TA76 89 aa2.13□□□□□ -2.07
SF3B3-213ENST00000569687 SSPOA2VEC9 5147 aa2.12□□□□□ -2.07
SF3B3-213ENST00000569687 SPRR5A0A1B0GTR4 108 aa2.1□□□□□ -2.07
SF3B3-213ENST00000569687 KRTAP10-7P60409 375 aaPredicted RBP2.09□□□□□ -2.07
SF3B3-213ENST00000569687 FSIP2Q5CZC0 6907 aa2.07□□□□□ -2.08
SF3B3-213ENST00000569687 KRTAP19-6Q3LI70 58 aa2.07□□□□□ -2.08
SF3B3-213ENST00000569687 KRTAP12-3P60328 96 aa2.06□□□□□ -2.08
SF3B3-213ENST00000569687 FCGBPQ9Y6R7 5405 aaPredicted RBP2.04□□□□□ -2.08
SF3B3-213ENST00000569687 KMT2DO14686 5537 aa2.01□□□□□ -2.09
SF3B3-213ENST00000569687 KRTAP19-5Q3LI72 72 aa2□□□□□ -2.09
SF3B3-213ENST00000569687 CRCT1Q9UGL9 99 aa2□□□□□ -2.09
SF3B3-213ENST00000569687 LCE3EQ5T5B0 92 aa1.99□□□□□ -2.09
SF3B3-213ENST00000569687 KRTAP5-3Q6L8H2 238 aa1.97□□□□□ -2.09
SF3B3-213ENST00000569687 KRTAP19-7Q3SYF9 63 aa1.96□□□□□ -2.1
SF3B3-213ENST00000569687 MACF1Q9UPN3 7388 aaKnown RBP1.95□□□□□ -2.1
SF3B3-213ENST00000569687 MT1EP04732 61 aa1.91□□□□□ -2.1
SF3B3-213ENST00000569687 MT1LQ93083 61 aa1.89□□□□□ -2.11
SF3B3-213ENST00000569687 SYNE2Q8WXH0 6885 aaKnown RBP1.87□□□□□ -2.11
SF3B3-213ENST00000569687 MDN1Q9NU22 5596 aa1.86□□□□□ -2.11
SF3B3-213ENST00000569687 MUC12Q9UKN1 5478 aa1.85□□□□□ -2.11
SF3B3-213ENST00000569687 KRTAP9-6A8MVA2 160 aa1.84□□□□□ -2.11
SF3B3-213ENST00000569687 MT1GP13640 62 aa1.84□□□□□ -2.11
SF3B3-213ENST00000569687 LCE1EQ5T753 118 aa1.84□□□□□ -2.11
SF3B3-213ENST00000569687 KRTAP5-9P26371 169 aa1.83□□□□□ -2.12
SF3B3-213ENST00000569687 SPRR2FQ96RM1 72 aa1.83□□□□□ -2.12
SF3B3-213ENST00000569687 KRTAP19-3Q7Z4W3 81 aa1.82□□□□□ -2.12
SF3B3-213ENST00000569687 KRTAP6-3Q3LI67 103 aa1.8□□□□□ -2.12
SF3B3-213ENST00000569687 KRTAP2-3P0C7H8 128 aa1.79□□□□□ -2.12
SF3B3-213ENST00000569687 MT1MQ8N339 61 aa1.79□□□□□ -2.12
SF3B3-213ENST00000569687 KRTAP2-4Q9BYR9 128 aa1.79□□□□□ -2.12
SF3B3-213ENST00000569687 KRTAP2-1Q9BYU5 128 aa1.79□□□□□ -2.12
SF3B3-213ENST00000569687 INE1O15225 51 aa1.76□□□□□ -2.13
SF3B3-213ENST00000569687 SPRR2EP22531 72 aa1.74□□□□□ -2.13
SF3B3-213ENST00000569687 SPRR2BP35325 72 aa1.74□□□□□ -2.13
SF3B3-213ENST00000569687 SPRR2AP35326 72 aa1.74□□□□□ -2.13
SF3B3-213ENST00000569687 LCE3DQ9BYE3 92 aa1.73□□□□□ -2.13
SF3B3-213ENST00000569687 KRTAP4-3Q9BYR4 195 aa1.73□□□□□ -2.13
SF3B3-213ENST00000569687 NEBP20929 6669 aa1.72□□□□□ -2.13
SF3B3-213ENST00000569687 DSTQ03001 7570 aaKnown RBP1.71□□□□□ -2.14
SF3B3-213ENST00000569687 SPRR2DP22532 72 aa1.68□□□□□ -2.14
SF3B3-213ENST00000569687 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
SF3B3-213ENST00000569687 MT1AP04731 61 aa1.62□□□□□ -2.15
SF3B3-213ENST00000569687 KRTAP5-5Q701N2 237 aaPredicted RBP1.62□□□□□ -2.15
SF3B3-213ENST00000569687 SYNE1Q8NF91 8797 aaKnown RBP1.59□□□□□ -2.15
SF3B3-213ENST00000569687 KRTAP6-1Q3LI64 71 aa1.59□□□□□ -2.15
SF3B3-213ENST00000569687 KRTAP20-1Q3LI63 56 aa1.56□□□□□ -2.16
SF3B3-213ENST00000569687 KRTAP12-4P60329 112 aa1.52□□□□□ -2.17
SF3B3-213ENST00000569687 KRTAP5-4Q6L8H1 288 aa1.52□□□□□ -2.17
SF3B3-213ENST00000569687 HMCN1Q96RW7 5635 aa1.47□□□□□ -2.17
SF3B3-213ENST00000569687 MT4P47944 62 aa1.45□□□□□ -2.18
SF3B3-213ENST00000569687 KRTAP6-2Q3LI66 62 aa1.44□□□□□ -2.18
SF3B3-213ENST00000569687 KRTAP20-2Q3LI61 65 aa1.43□□□□□ -2.18
SF3B3-213ENST00000569687 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.42□□□□□ -2.18
SF3B3-213ENST00000569687 KRTAP5-2Q701N4 177 aa1.39□□□□□ -2.19
SF3B3-213ENST00000569687 KRTAP5-1Q6L8H4 278 aa1.38□□□□□ -2.19
SF3B3-213ENST00000569687 AHNAK2Q8IVF2 5795 aa1.33□□□□□ -2.2
SF3B3-213ENST00000569687 PRM1P04553 51 aa1.3□□□□□ -2.2
SF3B3-213ENST00000569687 OBSCNQ5VST9 7968 aa1.29□□□□□ -2.2
SF3B3-213ENST00000569687 LCE1CQ5T751 118 aa1.26□□□□□ -2.21
SF3B3-213ENST00000569687 LCE1BQ5T7P3 118 aa1.26□□□□□ -2.21
SF3B3-213ENST00000569687 KRTAP5-10Q6L8G5 202 aa1.22□□□□□ -2.21
SF3B3-213ENST00000569687 GPR98Q8WXG9 6306 aa1.21□□□□□ -2.22
SF3B3-213ENST00000569687 MUC5ACP98088 5654 aa1.2□□□□□ -2.22
SF3B3-213ENST00000569687 KRTAP5-8O75690 187 aa1.19□□□□□ -2.22
SF3B3-213ENST00000569687 KRTAP4-4Q9BYR3 166 aa1.19□□□□□ -2.22
SF3B3-213ENST00000569687 KRTAP5-7Q6L8G8 165 aa1.16□□□□□ -2.22
SF3B3-213ENST00000569687 MUC5BQ9HC84 5762 aaPredicted RBP1.09□□□□□ -2.24
SF3B3-213ENST00000569687 KRTAP21-2Q3LI59 83 aa1.05□□□□□ -2.24
SF3B3-213ENST00000569687 AHNAKQ09666 5890 aaKnown RBP1.02□□□□□ -2.25
SF3B3-213ENST00000569687 MUC19Q7Z5P9 8384 aa0.97□□□□□ -2.25
SF3B3-213ENST00000569687 PHGR1C9JFL3 82 aa0.87□□□□□ -2.27
SF3B3-213ENST00000569687 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
SF3B3-213ENST00000569687 MUC16Q8WXI7 14507 aa0.62□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 10.3 ms