RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	MT1L	Q93083	61 aa		3.78	□□□□□ -1.8
CLN3-238	ENST00000569430	LCE3B	Q5TA77	95 aa		3.75	□□□□□ -1.81
CLN3-238	ENST00000569430	KRTAP19-7	Q3SYF9	63 aa		3.74	□□□□□ -1.81
CLN3-238	ENST00000569430	LOC100996750	A0A140TA64	210 aa		3.74	□□□□□ -1.81
CLN3-238	ENST00000569430	MT1E	P04732	61 aa		3.73	□□□□□ -1.81
CLN3-238	ENST00000569430	KRTAP19-4	Q3LI73	84 aa		3.72	□□□□□ -1.81
CLN3-238	ENST00000569430	KRTAP4-3	Q9BYR4	195 aa		3.72	□□□□□ -1.81
CLN3-238	ENST00000569430	KRTAP2-3	P0C7H8	128 aa		3.71	□□□□□ -1.82
CLN3-238	ENST00000569430	KRTAP2-4	Q9BYR9	128 aa		3.71	□□□□□ -1.82
CLN3-238	ENST00000569430	KRTAP2-1	Q9BYU5	128 aa		3.71	□□□□□ -1.82
CLN3-238	ENST00000569430	SPRR2F	Q96RM1	72 aa		3.7	□□□□□ -1.82
CLN3-238	ENST00000569430	SYNE2	Q8WXH0	6885 aa	Known RBP	3.64	□□□□□ -1.83
CLN3-238	ENST00000569430	MACF1	Q9UPN3	7388 aa	Known RBP	3.61	□□□□□ -1.83
CLN3-238	ENST00000569430	KRTAP19-3	Q7Z4W3	81 aa		3.55	□□□□□ -1.84
CLN3-238	ENST00000569430	KRTAP4-9	Q9BYQ8	210 aa		3.53	□□□□□ -1.84
CLN3-238	ENST00000569430	MT1M	Q8N339	61 aa		3.53	□□□□□ -1.84
CLN3-238	ENST00000569430	KRTAP19-6	Q3LI70	58 aa		3.52	□□□□□ -1.85
CLN3-238	ENST00000569430	LCE3D	Q9BYE3	92 aa		3.52	□□□□□ -1.85
CLN3-238	ENST00000569430	MDN1	Q9NU22	5596 aa		3.52	□□□□□ -1.85
CLN3-238	ENST00000569430	LCE2D	Q5TA82	110 aa	Predicted RBP	3.49	□□□□□ -1.85
CLN3-238	ENST00000569430	LCE3E	Q5T5B0	92 aa		3.46	□□□□□ -1.85
CLN3-238	ENST00000569430	KRTAP9-2	Q9BYQ4	174 aa		3.45	□□□□□ -1.86
CLN3-238	ENST00000569430	PRM1	P04553	51 aa		3.41	□□□□□ -1.86
CLN3-238	ENST00000569430	SPRR2E	P22531	72 aa		3.39	□□□□□ -1.87
CLN3-238	ENST00000569430	SPRR2B	P35325	72 aa		3.39	□□□□□ -1.87
CLN3-238	ENST00000569430	SPRR2A	P35326	72 aa		3.39	□□□□□ -1.87
CLN3-238	ENST00000569430	KRTAP9-7	A8MTY7	169 aa		3.26	□□□□□ -1.89
CLN3-238	ENST00000569430	KRTAP6-1	Q3LI64	71 aa		3.25	□□□□□ -1.89
CLN3-238	ENST00000569430	SPRR2D	P22532	72 aa		3.24	□□□□□ -1.89
CLN3-238	ENST00000569430	LCE5A	Q5TCM9	118 aa		3.21	□□□□□ -1.9
CLN3-238	ENST00000569430	MT1A	P04731	61 aa		3.19	□□□□□ -1.9
CLN3-238	ENST00000569430	KRTAP6-2	Q3LI66	62 aa		3.12	□□□□□ -1.91
CLN3-238	ENST00000569430	KRTAP9-6	A0A140TA67	174 aa		3.11	□□□□□ -1.91
CLN3-238	ENST00000569430	LCE1A	Q5T7P2	110 aa		3.08	□□□□□ -1.92
CLN3-238	ENST00000569430	MT3	P25713	68 aa		3.07	□□□□□ -1.92
CLN3-238	ENST00000569430	MUC19	Q7Z5P9	8384 aa		3.06	□□□□□ -1.92
CLN3-238	ENST00000569430	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	3.04	□□□□□ -1.92
CLN3-238	ENST00000569430	MT4	P47944	62 aa		2.96	□□□□□ -1.93
CLN3-238	ENST00000569430	KRTAP9-4	Q9BYQ2	154 aa		2.95	□□□□□ -1.94
CLN3-238	ENST00000569430	KRTAP6-3	Q3LI67	103 aa		2.95	□□□□□ -1.94
CLN3-238	ENST00000569430	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.93	□□□□□ -1.94
CLN3-238	ENST00000569430	KRTAP5-9	P26371	169 aa		2.89	□□□□□ -1.95
CLN3-238	ENST00000569430	KRTAP2-2	Q9BYT5	123 aa		2.86	□□□□□ -1.95
CLN3-238	ENST00000569430	LCE1D	Q5T752	114 aa		2.83	□□□□□ -1.96
CLN3-238	ENST00000569430	LCE1B	Q5T7P3	118 aa		2.81	□□□□□ -1.96
CLN3-238	ENST00000569430	LCE1E	Q5T753	118 aa		2.79	□□□□□ -1.96
CLN3-238	ENST00000569430	KRTAP4-6	Q9BYQ5	205 aa		2.72	□□□□□ -1.97
CLN3-238	ENST00000569430	NEB	P20929	6669 aa		2.7	□□□□□ -1.98
CLN3-238	ENST00000569430	LCE1F	Q5T754	118 aa		2.68	□□□□□ -1.98
CLN3-238	ENST00000569430	KRTAP20-1	Q3LI63	56 aa		2.67	□□□□□ -1.98
CLN3-238	ENST00000569430	HMCN1	Q96RW7	5635 aa		2.61	□□□□□ -1.99
CLN3-238	ENST00000569430	KRTAP4-11	Q9BYQ6	195 aa		2.6	□□□□□ -1.99
CLN3-238	ENST00000569430	LCE4A	Q5TA78	99 aa		2.59	□□□□□ -1.99
CLN3-238	ENST00000569430	KRTAP20-2	Q3LI61	65 aa		2.49	□□□□□ -2.01
CLN3-238	ENST00000569430	KRTAP5-4	Q6L8H1	288 aa		2.44	□□□□□ -2.02
CLN3-238	ENST00000569430	MUC5AC	P98088	5654 aa		2.44	□□□□□ -2.02
CLN3-238	ENST00000569430	KRTAP5-2	Q701N4	177 aa		2.26	□□□□□ -2.05
CLN3-238	ENST00000569430	KRTAP4-4	Q9BYR3	166 aa		2.25	□□□□□ -2.05
CLN3-238	ENST00000569430	KRTAP5-3	Q6L8H2	238 aa		2.24	□□□□□ -2.05
CLN3-238	ENST00000569430	KRTAP9-9	Q9BYP9	154 aa		2.24	□□□□□ -2.05
CLN3-238	ENST00000569430	GPR98	Q8WXG9	6306 aa		2.22	□□□□□ -2.05
CLN3-238	ENST00000569430	KRTAP5-10	Q6L8G5	202 aa		2.17	□□□□□ -2.06
CLN3-238	ENST00000569430	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.17	□□□□□ -2.06
CLN3-238	ENST00000569430	AHNAK2	Q8IVF2	5795 aa		2.12	□□□□□ -2.07
CLN3-238	ENST00000569430	KRTAP4-2	Q9BYR5	136 aa		2.08	□□□□□ -2.08
CLN3-238	ENST00000569430	LCE1C	Q5T751	118 aa		2.07	□□□□□ -2.08
CLN3-238	ENST00000569430	KRTAP4-12	Q9BQ66	201 aa		2.07	□□□□□ -2.08
CLN3-238	ENST00000569430	KRTAP5-1	Q6L8H4	278 aa		2.03	□□□□□ -2.08
CLN3-238	ENST00000569430	KRTAP5-8	O75690	187 aa		1.96	□□□□□ -2.1
CLN3-238	ENST00000569430	KRTAP21-2	Q3LI59	83 aa		1.93	□□□□□ -2.1
CLN3-238	ENST00000569430	KRTAP21-1	Q3LI58	79 aa		1.78	□□□□□ -2.12
CLN3-238	ENST00000569430	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	1.72	□□□□□ -2.13
CLN3-238	ENST00000569430	AHNAK	Q09666	5890 aa	Known RBP	1.7	□□□□□ -2.14
CLN3-238	ENST00000569430	KRTAP5-11	Q6L8G4	156 aa		1.67	□□□□□ -2.14
CLN3-238	ENST00000569430	KRTAP5-7	Q6L8G8	165 aa		1.63	□□□□□ -2.15
CLN3-238	ENST00000569430	PHGR1	C9JFL3	82 aa		1.49	□□□□□ -2.17
CLN3-238	ENST00000569430	MUC16	Q8WXI7	14507 aa		0.98	□□□□□ -2.25

Retrieved 77 of 20,778 RNA–protein pairs in 6.9 ms