RNA–Protein interactions for RNA: ENST00000564846.1

CLN6-205, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 1,762 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-205ENST00000564846 LCE3CQ5T5A8 94 aa6.92□□□□□ -1.3
CLN6-205ENST00000564846 SYNE2Q8WXH0 6885 aaKnown RBP6.92□□□□□ -1.3
CLN6-205ENST00000564846 SPRR2FQ96RM1 72 aa6.88□□□□□ -1.31
CLN6-205ENST00000564846 LUZP6Q538Z0 58 aa6.85□□□□□ -1.31
CLN6-205ENST00000564846 KRTAP19-3Q7Z4W3 81 aa6.8□□□□□ -1.32
CLN6-205ENST00000564846 MUC12Q9UKN1 5478 aa6.8□□□□□ -1.32
CLN6-205ENST00000564846 KRTAP5-9P26371 169 aa6.79□□□□□ -1.32
CLN6-205ENST00000564846 MT1GP13640 62 aa6.75□□□□□ -1.33
CLN6-205ENST00000564846 NDUFAF8A1L188 74 aa6.72□□□□□ -1.33
CLN6-205ENST00000564846 KRTAP4-7Q9BYR0 210 aa6.72□□□□□ -1.33
CLN6-205ENST00000564846 LCE5AQ5TCM9 118 aa6.67□□□□□ -1.34
CLN6-205ENST00000564846 MT1MQ8N339 61 aa6.66□□□□□ -1.34
CLN6-205ENST00000564846 KRTAP6-3Q3LI67 103 aa6.63□□□□□ -1.35
CLN6-205ENST00000564846 MDN1Q9NU22 5596 aa6.57□□□□□ -1.36
CLN6-205ENST00000564846 LCE1AQ5T7P2 110 aa6.57□□□□□ -1.36
CLN6-205ENST00000564846 KRTAP9-6A8MVA2 160 aa6.53□□□□□ -1.36
CLN6-205ENST00000564846 SPRR2EP22531 72 aa6.52□□□□□ -1.37
CLN6-205ENST00000564846 SPRR2BP35325 72 aa6.52□□□□□ -1.37
CLN6-205ENST00000564846 SPRR2AP35326 72 aa6.52□□□□□ -1.37
CLN6-205ENST00000564846 KRTAP4-3Q9BYR4 195 aa6.52□□□□□ -1.37
CLN6-205ENST00000564846 NEBP20929 6669 aa6.45□□□□□ -1.38
CLN6-205ENST00000564846 LOC100996750A0A140TA64 210 aa6.31□□□□□ -1.4
CLN6-205ENST00000564846 DSTQ03001 7570 aaKnown RBP6.29□□□□□ -1.4
CLN6-205ENST00000564846 SPRR2DP22532 72 aa6.26□□□□□ -1.41
CLN6-205ENST00000564846 KRTAP20-1Q3LI63 56 aa6.26□□□□□ -1.41
CLN6-205ENST00000564846 KRTAP2-3P0C7H8 128 aa6.08□□□□□ -1.44
CLN6-205ENST00000564846 KRTAP2-4Q9BYR9 128 aa6.08□□□□□ -1.44
CLN6-205ENST00000564846 KRTAP2-1Q9BYU5 128 aa6.08□□□□□ -1.44
CLN6-205ENST00000564846 LCE3BQ5TA77 95 aa6.01□□□□□ -1.45
CLN6-205ENST00000564846 KRTAP5-5Q701N2 237 aaPredicted RBP6.01□□□□□ -1.45
CLN6-205ENST00000564846 MT1AP04731 61 aa5.91□□□□□ -1.46
CLN6-205ENST00000564846 KRTAP6-1Q3LI64 71 aa5.84□□□□□ -1.47
CLN6-205ENST00000564846 GPR98Q8WXG9 6306 aa5.71□□□□□ -1.5
CLN6-205ENST00000564846 KRTAP5-4Q6L8H1 288 aa5.7□□□□□ -1.5
CLN6-205ENST00000564846 KRTAP2-2Q9BYT5 123 aa5.68□□□□□ -1.5
CLN6-205ENST00000564846 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
CLN6-205ENST00000564846 KRTAP9-4Q9BYQ2 154 aa5.62□□□□□ -1.51
CLN6-205ENST00000564846 LCE4AQ5TA78 99 aa5.58□□□□□ -1.52
CLN6-205ENST00000564846 KRTAP12-4P60329 112 aa5.57□□□□□ -1.52
CLN6-205ENST00000564846 INE1O15225 51 aa5.57□□□□□ -1.52
CLN6-205ENST00000564846 MT4P47944 62 aa5.43□□□□□ -1.54
CLN6-205ENST00000564846 KRTAP4-6Q9BYQ5 205 aa5.4□□□□□ -1.54
CLN6-205ENST00000564846 KRTAP4-9Q9BYQ8 210 aa5.38□□□□□ -1.55
CLN6-205ENST00000564846 KRTAP6-2Q3LI66 62 aa5.37□□□□□ -1.55
CLN6-205ENST00000564846 MT3P25713 68 aa5.37□□□□□ -1.55
CLN6-205ENST00000564846 LCE1DQ5T752 114 aa5.32□□□□□ -1.56
CLN6-205ENST00000564846 KRTAP20-2Q3LI61 65 aa5.32□□□□□ -1.56
CLN6-205ENST00000564846 HMCN1Q96RW7 5635 aa5.28□□□□□ -1.56
CLN6-205ENST00000564846 LCE3DQ9BYE3 92 aa5.22□□□□□ -1.57
CLN6-205ENST00000564846 KRTAP5-2Q701N4 177 aa5.18□□□□□ -1.58
CLN6-205ENST00000564846 KRTAP5-3Q6L8H2 238 aa5.11□□□□□ -1.59
CLN6-205ENST00000564846 LCE3EQ5T5B0 92 aa5.09□□□□□ -1.6
CLN6-205ENST00000564846 AHNAK2Q8IVF2 5795 aa5.01□□□□□ -1.61
CLN6-205ENST00000564846 OBSCNQ5VST9 7968 aa4.93□□□□□ -1.62
CLN6-205ENST00000564846 KRTAP5-10Q6L8G5 202 aa4.93□□□□□ -1.62
CLN6-205ENST00000564846 KRTAP5-7Q6L8G8 165 aa4.79□□□□□ -1.64
CLN6-205ENST00000564846 LCE1EQ5T753 118 aa4.65□□□□□ -1.67
CLN6-205ENST00000564846 KRTAP4-11Q9BYQ6 195 aa4.59□□□□□ -1.67
CLN6-205ENST00000564846 KRTAP4-12Q9BQ66 201 aa4.48□□□□□ -1.69
CLN6-205ENST00000564846 KRTAP5-1Q6L8H4 278 aa4.46□□□□□ -1.7
CLN6-205ENST00000564846 PRM1P04553 51 aa4.45□□□□□ -1.7
CLN6-205ENST00000564846 KRTAP5-8O75690 187 aa4.41□□□□□ -1.7
CLN6-205ENST00000564846 KRTAP9-9Q9BYP9 154 aa4.38□□□□□ -1.71
CLN6-205ENST00000564846 LCE1BQ5T7P3 118 aa4.34□□□□□ -1.71
CLN6-205ENST00000564846 MUC5ACP98088 5654 aa4.33□□□□□ -1.72
CLN6-205ENST00000564846 LCE1CQ5T751 118 aa4.32□□□□□ -1.72
CLN6-205ENST00000564846 AHNAKQ09666 5890 aaKnown RBP4.32□□□□□ -1.72
CLN6-205ENST00000564846 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
CLN6-205ENST00000564846 MUC5BQ9HC84 5762 aaPredicted RBP4.22□□□□□ -1.73
CLN6-205ENST00000564846 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.06□□□□□ -1.76
CLN6-205ENST00000564846 LCE1FQ5T754 118 aa3.92□□□□□ -1.78
CLN6-205ENST00000564846 KRTAP21-2Q3LI59 83 aa3.83□□□□□ -1.8
CLN6-205ENST00000564846 KRTAP5-11Q6L8G4 156 aa3.81□□□□□ -1.8
CLN6-205ENST00000564846 KRTAP4-4Q9BYR3 166 aa3.38□□□□□ -1.87
CLN6-205ENST00000564846 PHGR1C9JFL3 82 aa3.27□□□□□ -1.89
CLN6-205ENST00000564846 MUC19Q7Z5P9 8384 aa2.89□□□□□ -1.95
CLN6-205ENST00000564846 KRTAP21-1Q3LI58 79 aa2.74□□□□□ -1.97
CLN6-205ENST00000564846 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 126.6 ms