RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TNP1P09430 55 aa5.72□□□□□ -1.49
CLN3-211ENST00000564091 KRTAP4-7Q9BYR0 210 aa5.72□□□□□ -1.49
CLN3-211ENST00000564091 SMIM26A0A096LP01 95 aa5.71□□□□□ -1.5
CLN3-211ENST00000564091 KRTAP5-7Q6L8G8 165 aa5.68□□□□□ -1.5
CLN3-211ENST00000564091 KRTAP5-3Q6L8H2 238 aa5.68□□□□□ -1.5
CLN3-211ENST00000564091 A0A1B0GU69 56 aa5.64□□□□□ -1.51
CLN3-211ENST00000564091 SYNE1Q8NF91 8797 aaKnown RBP5.62□□□□□ -1.51
CLN3-211ENST00000564091 KRTAP20-2Q3LI61 65 aa5.6□□□□□ -1.51
CLN3-211ENST00000564091 H7BZZ5 65 aa5.59□□□□□ -1.51
CLN3-211ENST00000564091 KRTAP12-3P60328 96 aa5.59□□□□□ -1.51
CLN3-211ENST00000564091 COX7CP15954 63 aa5.58□□□□□ -1.52
CLN3-211ENST00000564091 KRTAP5-5Q701N2 237 aaPredicted RBP5.54□□□□□ -1.52
CLN3-211ENST00000564091 SPRR5A0A1B0GTR4 108 aa5.52□□□□□ -1.53
CLN3-211ENST00000564091 KRTAP12-4P60329 112 aa5.47□□□□□ -1.53
CLN3-211ENST00000564091 LOC100996750A0A140TA64 210 aa5.43□□□□□ -1.54
CLN3-211ENST00000564091 ANAPC13Q9BS18 74 aa5.42□□□□□ -1.54
CLN3-211ENST00000564091 PRR15LQ9BU68 103 aa5.35□□□□□ -1.55
CLN3-211ENST00000564091 CCDC179H3BU77 68 aa5.28□□□□□ -1.56
CLN3-211ENST00000564091 LINC01558Q9Y6Z2 57 aa5.25□□□□□ -1.57
CLN3-211ENST00000564091 KRTAP25-1Q3LHN0 102 aa5.22□□□□□ -1.57
CLN3-211ENST00000564091 KRTAP4-11Q9BYQ6 195 aa5.19□□□□□ -1.58
CLN3-211ENST00000564091 UQCR11O14957 56 aa5.18□□□□□ -1.58
CLN3-211ENST00000564091 ATP5EP56381 51 aaPredicted RBP5.18□□□□□ -1.58
CLN3-211ENST00000564091 RPS28P62857 69 aaKnown RBP5.17□□□□□ -1.58
CLN3-211ENST00000564091 AHNAKQ09666 5890 aaKnown RBP5.16□□□□□ -1.58
CLN3-211ENST00000564091 KRTAP19-4Q3LI73 84 aa5.16□□□□□ -1.58
CLN3-211ENST00000564091 KRTAP5-2Q701N4 177 aa5.12□□□□□ -1.59
CLN3-211ENST00000564091 MUC5BQ9HC84 5762 aaPredicted RBP5.12□□□□□ -1.59
CLN3-211ENST00000564091 TMEM258P61165 79 aa5.11□□□□□ -1.59
CLN3-211ENST00000564091 KRTAP15-1Q3LI76 137 aa5.11□□□□□ -1.59
CLN3-211ENST00000564091 LCE3CQ5T5A8 94 aa5.11□□□□□ -1.59
CLN3-211ENST00000564091 KRTAP6-1Q3LI64 71 aa5.08□□□□□ -1.6
CLN3-211ENST00000564091 MT1AP04731 61 aa5.06□□□□□ -1.6
CLN3-211ENST00000564091 MUC5ACP98088 5654 aa5.05□□□□□ -1.6
CLN3-211ENST00000564091 MIR22HGQ0VDD5 57 aa5.05□□□□□ -1.6
CLN3-211ENST00000564091 OBSCNQ5VST9 7968 aa5.05□□□□□ -1.6
CLN3-211ENST00000564091 KRTAP5-8O75690 187 aa5.03□□□□□ -1.6
CLN3-211ENST00000564091 KRTAP23-1A1A580 65 aa4.98□□□□□ -1.61
CLN3-211ENST00000564091 K7ERS5 55 aa4.98□□□□□ -1.61
CLN3-211ENST00000564091 KRTAP9-4Q9BYQ2 154 aa4.94□□□□□ -1.62
CLN3-211ENST00000564091 KRTAP6-2Q3LI66 62 aa4.91□□□□□ -1.62
CLN3-211ENST00000564091 PRO0628Q9UI54 55 aa4.89□□□□□ -1.63
CLN3-211ENST00000564091 KRTAP9-6A8MVA2 160 aa4.86□□□□□ -1.63
CLN3-211ENST00000564091 KRTAP9-9Q9BYP9 154 aa4.81□□□□□ -1.64
CLN3-211ENST00000564091 V9GYY9 64 aa4.81□□□□□ -1.64
CLN3-211ENST00000564091 PSPHP1O15172 72 aa4.8□□□□□ -1.64
CLN3-211ENST00000564091 Q1T7F1 81 aa4.77□□□□□ -1.65
CLN3-211ENST00000564091 CDC42SE1Q9NRR8 79 aa4.69□□□□□ -1.66
CLN3-211ENST00000564091 KRTAP5-1Q6L8H4 278 aa4.66□□□□□ -1.66
CLN3-211ENST00000564091 MT3P25713 68 aa4.65□□□□□ -1.67
CLN3-211ENST00000564091 ROMO1P60602 79 aa4.61□□□□□ -1.67
CLN3-211ENST00000564091 A6NED7 52 aa4.6□□□□□ -1.67
CLN3-211ENST00000564091 BRK1Q8WUW1 75 aa4.59□□□□□ -1.67
CLN3-211ENST00000564091 PMAIP1Q13794 54 aa4.57□□□□□ -1.68
CLN3-211ENST00000564091 KTN1-AS1Q86SY8 53 aa4.43□□□□□ -1.7
CLN3-211ENST00000564091 LCE1EQ5T753 118 aa4.32□□□□□ -1.72
CLN3-211ENST00000564091 LCE1BQ5T7P3 118 aa4.15□□□□□ -1.75
CLN3-211ENST00000564091 H3BS24 57 aa4.14□□□□□ -1.75
CLN3-211ENST00000564091 KRTAP4-2Q9BYR5 136 aa4.14□□□□□ -1.75
CLN3-211ENST00000564091 LCE1CQ5T751 118 aa4.02□□□□□ -1.77
CLN3-211ENST00000564091 PRAC1Q96KF2 57 aa3.98□□□□□ -1.77
CLN3-211ENST00000564091 KRTAP4-12Q9BQ66 201 aa3.91□□□□□ -1.78
CLN3-211ENST00000564091 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
CLN3-211ENST00000564091 KRTAP5-11Q6L8G4 156 aa3.66□□□□□ -1.82
CLN3-211ENST00000564091 LCE1FQ5T754 118 aa3.62□□□□□ -1.83
CLN3-211ENST00000564091 LCE3DQ9BYE3 92 aa3.62□□□□□ -1.83
CLN3-211ENST00000564091 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.61□□□□□ -1.83
CLN3-211ENST00000564091 NDUFAF8A1L188 74 aa3.47□□□□□ -1.85
CLN3-211ENST00000564091 PHGR1C9JFL3 82 aa3.44□□□□□ -1.86
CLN3-211ENST00000564091 LUZP6Q538Z0 58 aa3.39□□□□□ -1.87
CLN3-211ENST00000564091 LCE3EQ5T5B0 92 aa3.35□□□□□ -1.87
CLN3-211ENST00000564091 KRTAP21-2Q3LI59 83 aa3.34□□□□□ -1.87
CLN3-211ENST00000564091 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
CLN3-211ENST00000564091 MUC19Q7Z5P9 8384 aa3.15□□□□□ -1.91
CLN3-211ENST00000564091 INE1O15225 51 aa3.03□□□□□ -1.92
CLN3-211ENST00000564091 KRTAP21-1Q3LI58 79 aa2.6□□□□□ -1.99
CLN3-211ENST00000564091 PRM1P04553 51 aa2.36□□□□□ -2.03
CLN3-211ENST00000564091 MUC16Q8WXI7 14507 aa2.17□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 12.2 ms