RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 NEBP20929 6669 aa6.02□□□□□ -1.45
VPS4A-202ENST00000562754 MDN1Q9NU22 5596 aa5.97□□□□□ -1.45
VPS4A-202ENST00000562754 MT1LQ93083 61 aa5.95□□□□□ -1.46
VPS4A-202ENST00000562754 KRTAP19-3Q7Z4W3 81 aa5.94□□□□□ -1.46
VPS4A-202ENST00000562754 PRAC1Q96KF2 57 aa5.91□□□□□ -1.46
VPS4A-202ENST00000562754 LCE5AQ5TCM9 118 aa5.89□□□□□ -1.47
VPS4A-202ENST00000562754 MT1GP13640 62 aa5.84□□□□□ -1.47
VPS4A-202ENST00000562754 KTN1-AS1Q86SY8 53 aa5.84□□□□□ -1.47
VPS4A-202ENST00000562754 KRTAP15-1Q3LI76 137 aa5.83□□□□□ -1.48
VPS4A-202ENST00000562754 SPRR2DP22532 72 aa5.82□□□□□ -1.48
VPS4A-202ENST00000562754 MT1MQ8N339 61 aa5.79□□□□□ -1.48
VPS4A-202ENST00000562754 KRTAP4-7Q9BYR0 210 aa5.71□□□□□ -1.5
VPS4A-202ENST00000562754 KRTAP4-3Q9BYR4 195 aa5.67□□□□□ -1.5
VPS4A-202ENST00000562754 KRTAP19-4Q3LI73 84 aa5.66□□□□□ -1.5
VPS4A-202ENST00000562754 KRTAP20-1Q3LI63 56 aa5.65□□□□□ -1.5
VPS4A-202ENST00000562754 KRTAP2-3P0C7H8 128 aa5.63□□□□□ -1.51
VPS4A-202ENST00000562754 KRTAP2-4Q9BYR9 128 aa5.63□□□□□ -1.51
VPS4A-202ENST00000562754 LCE3CQ5T5A8 94 aa5.62□□□□□ -1.51
VPS4A-202ENST00000562754 LCE3BQ5TA77 95 aa5.61□□□□□ -1.51
VPS4A-202ENST00000562754 SVIPQ8NHG7 77 aa5.58□□□□□ -1.52
VPS4A-202ENST00000562754 DSTQ03001 7570 aaKnown RBP5.51□□□□□ -1.53
VPS4A-202ENST00000562754 KRTAP2-2Q9BYT5 123 aa5.47□□□□□ -1.53
VPS4A-202ENST00000562754 KRTAP2-1Q9BYU5 128 aa5.47□□□□□ -1.53
VPS4A-202ENST00000562754 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
VPS4A-202ENST00000562754 KRTAP9-6A8MVA2 160 aa5.35□□□□□ -1.55
VPS4A-202ENST00000562754 KRTAP5-5Q701N2 237 aaPredicted RBP5.27□□□□□ -1.57
VPS4A-202ENST00000562754 SPRR5A0A1B0GTR4 108 aa5.25□□□□□ -1.57
VPS4A-202ENST00000562754 KRTAP5-4Q6L8H1 288 aa5.2□□□□□ -1.58
VPS4A-202ENST00000562754 LCE4AQ5TA78 99 aa5.16□□□□□ -1.58
VPS4A-202ENST00000562754 KRTAP4-9Q9BYQ8 210 aa5.1□□□□□ -1.59
VPS4A-202ENST00000562754 MT1AP04731 61 aa5.06□□□□□ -1.6
VPS4A-202ENST00000562754 MT4P47944 62 aa5.06□□□□□ -1.6
VPS4A-202ENST00000562754 LCE1DQ5T752 114 aa5.05□□□□□ -1.6
VPS4A-202ENST00000562754 KRTAP6-1Q3LI64 71 aa5.01□□□□□ -1.61
VPS4A-202ENST00000562754 KRTAP4-6Q9BYQ5 205 aa4.99□□□□□ -1.61
VPS4A-202ENST00000562754 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.62
VPS4A-202ENST00000562754 KRTAP12-4P60329 112 aa4.93□□□□□ -1.62
VPS4A-202ENST00000562754 HMCN1Q96RW7 5635 aa4.9□□□□□ -1.62
VPS4A-202ENST00000562754 KRTAP20-2Q3LI61 65 aa4.87□□□□□ -1.63
VPS4A-202ENST00000562754 KRTAP9-4Q9BYQ2 154 aa4.81□□□□□ -1.64
VPS4A-202ENST00000562754 LUZP6Q538Z0 58 aa4.79□□□□□ -1.64
VPS4A-202ENST00000562754 KRTAP5-3Q6L8H2 238 aa4.72□□□□□ -1.65
VPS4A-202ENST00000562754 KRTAP6-2Q3LI66 62 aa4.67□□□□□ -1.66
VPS4A-202ENST00000562754 KRTAP5-2Q701N4 177 aa4.66□□□□□ -1.66
VPS4A-202ENST00000562754 AHNAK2Q8IVF2 5795 aa4.58□□□□□ -1.68
VPS4A-202ENST00000562754 H3BS24 57 aa4.57□□□□□ -1.68
VPS4A-202ENST00000562754 MT3P25713 68 aa4.57□□□□□ -1.68
VPS4A-202ENST00000562754 GPR98Q8WXG9 6306 aa4.52□□□□□ -1.69
VPS4A-202ENST00000562754 NDUFAF8A1L188 74 aa4.45□□□□□ -1.7
VPS4A-202ENST00000562754 KRTAP5-10Q6L8G5 202 aa4.41□□□□□ -1.7
VPS4A-202ENST00000562754 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
VPS4A-202ENST00000562754 A0A0A0MQY5 61 aa4.25□□□□□ -1.73
VPS4A-202ENST00000562754 OBSCNQ5VST9 7968 aa4.24□□□□□ -1.73
VPS4A-202ENST00000562754 KRTAP5-8O75690 187 aa4.16□□□□□ -1.74
VPS4A-202ENST00000562754 KRTAP5-7Q6L8G8 165 aa4.15□□□□□ -1.75
VPS4A-202ENST00000562754 LCE3DQ9BYE3 92 aa4.14□□□□□ -1.75
VPS4A-202ENST00000562754 KRTAP5-1Q6L8H4 278 aa4.08□□□□□ -1.76
VPS4A-202ENST00000562754 LCE1EQ5T753 118 aa4.06□□□□□ -1.76
VPS4A-202ENST00000562754 LCE3EQ5T5B0 92 aa3.99□□□□□ -1.77
VPS4A-202ENST00000562754 MUC5ACP98088 5654 aa3.94□□□□□ -1.78
VPS4A-202ENST00000562754 KRTAP4-2Q9BYR5 136 aa3.84□□□□□ -1.79
VPS4A-202ENST00000562754 LCE1BQ5T7P3 118 aa3.81□□□□□ -1.8
VPS4A-202ENST00000562754 KRTAP9-9Q9BYP9 154 aa3.8□□□□□ -1.8
VPS4A-202ENST00000562754 LCE1CQ5T751 118 aa3.77□□□□□ -1.81
VPS4A-202ENST00000562754 MUC5BQ9HC84 5762 aaPredicted RBP3.64□□□□□ -1.83
VPS4A-202ENST00000562754 INE1O15225 51 aa3.63□□□□□ -1.83
VPS4A-202ENST00000562754 AHNAKQ09666 5890 aaKnown RBP3.61□□□□□ -1.83
VPS4A-202ENST00000562754 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.52□□□□□ -1.85
VPS4A-202ENST00000562754 KRTAP5-11Q6L8G4 156 aa3.39□□□□□ -1.87
VPS4A-202ENST00000562754 PRM1P04553 51 aa3.33□□□□□ -1.88
VPS4A-202ENST00000562754 KRTAP21-2Q3LI59 83 aa3.29□□□□□ -1.88
VPS4A-202ENST00000562754 KRTAP4-12Q9BQ66 201 aa3.28□□□□□ -1.88
VPS4A-202ENST00000562754 LCE1FQ5T754 118 aa3.13□□□□□ -1.91
VPS4A-202ENST00000562754 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
VPS4A-202ENST00000562754 PHGR1C9JFL3 82 aa2.91□□□□□ -1.94
VPS4A-202ENST00000562754 MUC19Q7Z5P9 8384 aa2.57□□□□□ -2
VPS4A-202ENST00000562754 KRTAP21-1Q3LI58 79 aa1.96□□□□□ -2.1
VPS4A-202ENST00000562754 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 75.7 ms