RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	PCOTH	Q58A44	107 aa		1.84	□□□□□ -2.11
LRRC28-222	ENST00000561431	RPL37	P61927	97 aa	Known RBP	1.83	□□□□□ -2.12
LRRC28-222	ENST00000561431	MT1H	P80294	61 aa		1.81	□□□□□ -2.12
LRRC28-222	ENST00000561431	KRTAP21-2	Q3LI59	83 aa		1.81	□□□□□ -2.12
LRRC28-222	ENST00000561431	KRTAP13-4	Q3LI77	160 aa		1.78	□□□□□ -2.12
LRRC28-222	ENST00000561431	COX6B2	Q6YFQ2	88 aa		1.75	□□□□□ -2.13
LRRC28-222	ENST00000561431	FLG	P20930	4061 aa	Predicted RBP	1.75	□□□□□ -2.13
LRRC28-222	ENST00000561431		M0R2T5	61 aa		1.73	□□□□□ -2.13
LRRC28-222	ENST00000561431		K7EQZ3	153 aa		1.72	□□□□□ -2.13
LRRC28-222	ENST00000561431	KRTAP12-3	P60328	96 aa		1.72	□□□□□ -2.13
LRRC28-222	ENST00000561431	CRIPT	Q9P021	101 aa		1.72	□□□□□ -2.13
LRRC28-222	ENST00000561431	CRCT1	Q9UGL9	99 aa		1.72	□□□□□ -2.13
LRRC28-222	ENST00000561431	MMP24-AS1	A0A0U1RRL7	71 aa		1.7	□□□□□ -2.14
LRRC28-222	ENST00000561431	MT2A	P02795	61 aa		1.7	□□□□□ -2.14
LRRC28-222	ENST00000561431	MRPL34	Q9BQ48	92 aa	Known RBP	1.7	□□□□□ -2.14
LRRC28-222	ENST00000561431	FSIP2	Q5CZC0	6907 aa		1.7	□□□□□ -2.14
LRRC28-222	ENST00000561431	TP53AIP1	Q9HCN2	124 aa		1.69	□□□□□ -2.14
LRRC28-222	ENST00000561431	MT1F	P04733	61 aa		1.68	□□□□□ -2.14
LRRC28-222	ENST00000561431	WFDC13	Q8IUB5	93 aa		1.67	□□□□□ -2.14
LRRC28-222	ENST00000561431		H0YAA0	97 aa		1.65	□□□□□ -2.15
LRRC28-222	ENST00000561431	USH2A	O75445	5202 aa		1.64	□□□□□ -2.15
LRRC28-222	ENST00000561431	KRTAP6-3	Q3LI67	103 aa		1.64	□□□□□ -2.15
LRRC28-222	ENST00000561431	SSPO	A2VEC9	5147 aa		1.63	□□□□□ -2.15
LRRC28-222	ENST00000561431	H1FX-AS1	Q4G0G2	97 aa		1.63	□□□□□ -2.15
LRRC28-222	ENST00000561431	KRTAP12-4	P60329	112 aa		1.6	□□□□□ -2.15
LRRC28-222	ENST00000561431	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	1.6	□□□□□ -2.15
LRRC28-222	ENST00000561431	KRTAP19-6	Q3LI70	58 aa		1.59	□□□□□ -2.15
LRRC28-222	ENST00000561431	C10orf95	Q9H7T3	257 aa		1.58	□□□□□ -2.16
LRRC28-222	ENST00000561431	KRTAP12-1	P59990	96 aa		1.57	□□□□□ -2.16
LRRC28-222	ENST00000561431	MACF1	Q9UPN3	7388 aa	Known RBP	1.57	□□□□□ -2.16
LRRC28-222	ENST00000561431		S4R3F8	94 aa		1.56	□□□□□ -2.16
LRRC28-222	ENST00000561431	MT1B	P07438	61 aa		1.55	□□□□□ -2.16
LRRC28-222	ENST00000561431	SPRR2G	Q9BYE4	73 aa		1.55	□□□□□ -2.16
LRRC28-222	ENST00000561431	KRTAP19-8	Q3LI54	63 aa		1.54	□□□□□ -2.16
LRRC28-222	ENST00000561431	HMCN1	Q96RW7	5635 aa		1.54	□□□□□ -2.16
LRRC28-222	ENST00000561431	SYNE2	Q8WXH0	6885 aa	Known RBP	1.5	□□□□□ -2.17
LRRC28-222	ENST00000561431	MT1X	P80297	61 aa		1.46	□□□□□ -2.18
LRRC28-222	ENST00000561431		A0A0D9SG42	100 aa		1.43	□□□□□ -2.18
LRRC28-222	ENST00000561431	NEB	P20929	6669 aa		1.43	□□□□□ -2.18
LRRC28-222	ENST00000561431		M0QZ58	72 aa		1.42	□□□□□ -2.18
LRRC28-222	ENST00000561431	KMT2D	O14686	5537 aa		1.41	□□□□□ -2.18
LRRC28-222	ENST00000561431	MUC12	Q9UKN1	5478 aa		1.38	□□□□□ -2.19
LRRC28-222	ENST00000561431	KRTAP20-1	Q3LI63	56 aa		1.38	□□□□□ -2.19
LRRC28-222	ENST00000561431	KRTAP8-1	Q8IUC2	63 aa		1.38	□□□□□ -2.19
LRRC28-222	ENST00000561431	SPRR2F	Q96RM1	72 aa		1.38	□□□□□ -2.19
LRRC28-222	ENST00000561431	MDN1	Q9NU22	5596 aa		1.37	□□□□□ -2.19
LRRC28-222	ENST00000561431	SPRR2E	P22531	72 aa		1.36	□□□□□ -2.19
LRRC28-222	ENST00000561431	SPRR2B	P35325	72 aa		1.36	□□□□□ -2.19
LRRC28-222	ENST00000561431	SPRR2A	P35326	72 aa		1.36	□□□□□ -2.19
LRRC28-222	ENST00000561431	KRTAP2-3	P0C7H8	128 aa		1.34	□□□□□ -2.19
LRRC28-222	ENST00000561431	KRTAP2-4	Q9BYR9	128 aa		1.34	□□□□□ -2.19
LRRC28-222	ENST00000561431	SPRR2D	P22532	72 aa		1.31	□□□□□ -2.2
LRRC28-222	ENST00000561431	KRTAP19-7	Q3SYF9	63 aa		1.31	□□□□□ -2.2
LRRC28-222	ENST00000561431	KRTAP2-1	Q9BYU5	128 aa		1.3	□□□□□ -2.2
LRRC28-222	ENST00000561431	MT1E	P04732	61 aa		1.29	□□□□□ -2.2
LRRC28-222	ENST00000561431	KRTAP19-5	Q3LI72	72 aa		1.26	□□□□□ -2.21
LRRC28-222	ENST00000561431	KRTAP19-3	Q7Z4W3	81 aa		1.26	□□□□□ -2.21
LRRC28-222	ENST00000561431	DST	Q03001	7570 aa	Known RBP	1.24	□□□□□ -2.21
LRRC28-222	ENST00000561431	MT1G	P13640	62 aa		1.23	□□□□□ -2.21
LRRC28-222	ENST00000561431	MT1L	Q93083	61 aa		1.23	□□□□□ -2.21
LRRC28-222	ENST00000561431	MT1M	Q8N339	61 aa		1.22	□□□□□ -2.21
LRRC28-222	ENST00000561431	TNP1	P09430	55 aa		1.2	□□□□□ -2.22
LRRC28-222	ENST00000561431	GPR98	Q8WXG9	6306 aa		1.17	□□□□□ -2.22
LRRC28-222	ENST00000561431	MT4	P47944	62 aa		1.15	□□□□□ -2.23
LRRC28-222	ENST00000561431	KRTAP20-2	Q3LI61	65 aa		1.1	□□□□□ -2.23
LRRC28-222	ENST00000561431	KRTAP5-10	Q6L8G5	202 aa		1.1	□□□□□ -2.23
LRRC28-222	ENST00000561431	AHNAK2	Q8IVF2	5795 aa		1.09	□□□□□ -2.24
LRRC28-222	ENST00000561431	SYNE1	Q8NF91	8797 aa	Known RBP	1.07	□□□□□ -2.24
LRRC28-222	ENST00000561431	MT1A	P04731	61 aa		1.04	□□□□□ -2.24
LRRC28-222	ENST00000561431	KRTAP6-1	Q3LI64	71 aa		1.04	□□□□□ -2.24
LRRC28-222	ENST00000561431	KRTAP6-2	Q3LI66	62 aa		0.99	□□□□□ -2.25
LRRC28-222	ENST00000561431	PRM1	P04553	51 aa		0.95	□□□□□ -2.26
LRRC28-222	ENST00000561431	MUC5AC	P98088	5654 aa		0.94	□□□□□ -2.26
LRRC28-222	ENST00000561431	AHNAK	Q09666	5890 aa	Known RBP	0.93	□□□□□ -2.26
LRRC28-222	ENST00000561431	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.9	□□□□□ -2.27
LRRC28-222	ENST00000561431	MUC16	Q8WXI7	14507 aa		0.8	□□□□□ -2.28
LRRC28-222	ENST00000561431	KRTAP21-1	Q3LI58	79 aa		0.78	□□□□□ -2.28
LRRC28-222	ENST00000561431	PHGR1	C9JFL3	82 aa		0.64	□□□□□ -2.31

Retrieved 78 of 20,778 RNA–protein pairs in 88.3 ms