RNA–Protein interactions for RNA: ENST00000560998.5

RABGGTA-220, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 1,997 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-220ENST00000560998 KRTAP9-6A8MVA2 160 aa4.87□□□□□ -1.63
RABGGTA-220ENST00000560998 CRCT1Q9UGL9 99 aa4.86□□□□□ -1.63
RABGGTA-220ENST00000560998 MT1EP04732 61 aa4.83□□□□□ -1.64
RABGGTA-220ENST00000560998 MT1LQ93083 61 aa4.79□□□□□ -1.64
RABGGTA-220ENST00000560998 KRTAP4-7Q9BYR0 210 aa4.74□□□□□ -1.65
RABGGTA-220ENST00000560998 FCGBPQ9Y6R7 5405 aaPredicted RBP4.7□□□□□ -1.66
RABGGTA-220ENST00000560998 KRTAP9-7A8MTY7 169 aa4.57□□□□□ -1.68
RABGGTA-220ENST00000560998 KRTAP19-3Q7Z4W3 81 aa4.55□□□□□ -1.68
RABGGTA-220ENST00000560998 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.54□□□□□ -1.68
RABGGTA-220ENST00000560998 MT1GP13640 62 aa4.53□□□□□ -1.68
RABGGTA-220ENST00000560998 MT1MQ8N339 61 aa4.53□□□□□ -1.68
RABGGTA-220ENST00000560998 MUC12Q9UKN1 5478 aa4.52□□□□□ -1.69
RABGGTA-220ENST00000560998 KRTAP4-3Q9BYR4 195 aa4.51□□□□□ -1.69
RABGGTA-220ENST00000560998 KRTAP12-4P60329 112 aa4.47□□□□□ -1.69
RABGGTA-220ENST00000560998 SPRR2FQ96RM1 72 aa4.45□□□□□ -1.7
RABGGTA-220ENST00000560998 LOC100996750A0A140TA64 210 aa4.44□□□□□ -1.7
RABGGTA-220ENST00000560998 LCE5AQ5TCM9 118 aa4.43□□□□□ -1.7
RABGGTA-220ENST00000560998 MACF1Q9UPN3 7388 aaKnown RBP4.4□□□□□ -1.7
RABGGTA-220ENST00000560998 SYNE2Q8WXH0 6885 aaKnown RBP4.35□□□□□ -1.71
RABGGTA-220ENST00000560998 KRTAP5-9P26371 169 aa4.26□□□□□ -1.73
RABGGTA-220ENST00000560998 LCE1AQ5T7P2 110 aa4.22□□□□□ -1.73
RABGGTA-220ENST00000560998 MDN1Q9NU22 5596 aa4.19□□□□□ -1.74
RABGGTA-220ENST00000560998 DSTQ03001 7570 aaKnown RBP4.19□□□□□ -1.74
RABGGTA-220ENST00000560998 KRTAP6-3Q3LI67 103 aa4.18□□□□□ -1.74
RABGGTA-220ENST00000560998 MT1AP04731 61 aa4.16□□□□□ -1.74
RABGGTA-220ENST00000560998 SPRR2EP22531 72 aa4.13□□□□□ -1.75
RABGGTA-220ENST00000560998 SPRR2BP35325 72 aa4.13□□□□□ -1.75
RABGGTA-220ENST00000560998 SPRR2AP35326 72 aa4.13□□□□□ -1.75
RABGGTA-220ENST00000560998 KRTAP6-1Q3LI64 71 aa4.05□□□□□ -1.76
RABGGTA-220ENST00000560998 NEBP20929 6669 aa4.05□□□□□ -1.76
RABGGTA-220ENST00000560998 LCE3BQ5TA77 95 aa4.03□□□□□ -1.76
RABGGTA-220ENST00000560998 KRTAP5-5Q701N2 237 aaPredicted RBP4.03□□□□□ -1.76
RABGGTA-220ENST00000560998 LCE3EQ5T5B0 92 aa4.02□□□□□ -1.77
RABGGTA-220ENST00000560998 PRM1P04553 51 aa4.01□□□□□ -1.77
RABGGTA-220ENST00000560998 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
RABGGTA-220ENST00000560998 KRTAP20-1Q3LI63 56 aa3.98□□□□□ -1.77
RABGGTA-220ENST00000560998 SPRR2DP22532 72 aa3.96□□□□□ -1.78
RABGGTA-220ENST00000560998 KRTAP4-9Q9BYQ8 210 aa3.95□□□□□ -1.78
RABGGTA-220ENST00000560998 KRTAP9-4Q9BYQ2 154 aa3.82□□□□□ -1.8
RABGGTA-220ENST00000560998 SYNE1Q8NF91 8797 aaKnown RBP3.82□□□□□ -1.8
RABGGTA-220ENST00000560998 KRTAP2-2Q9BYT5 123 aa3.78□□□□□ -1.8
RABGGTA-220ENST00000560998 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
RABGGTA-220ENST00000560998 KRTAP5-4Q6L8H1 288 aa3.65□□□□□ -1.82
RABGGTA-220ENST00000560998 MT3P25713 68 aa3.63□□□□□ -1.83
RABGGTA-220ENST00000560998 KRTAP4-6Q9BYQ5 205 aa3.48□□□□□ -1.85
RABGGTA-220ENST00000560998 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
RABGGTA-220ENST00000560998 MT4P47944 62 aa3.45□□□□□ -1.86
RABGGTA-220ENST00000560998 GPR98Q8WXG9 6306 aa3.45□□□□□ -1.86
RABGGTA-220ENST00000560998 KRTAP20-2Q3LI61 65 aa3.42□□□□□ -1.86
RABGGTA-220ENST00000560998 KRTAP5-2Q701N4 177 aa3.39□□□□□ -1.87
RABGGTA-220ENST00000560998 HMCN1Q96RW7 5635 aa3.34□□□□□ -1.87
RABGGTA-220ENST00000560998 OBSCNQ5VST9 7968 aa3.33□□□□□ -1.88
RABGGTA-220ENST00000560998 LCE1DQ5T752 114 aa3.32□□□□□ -1.88
RABGGTA-220ENST00000560998 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
RABGGTA-220ENST00000560998 KRTAP5-3Q6L8H2 238 aa3.27□□□□□ -1.89
RABGGTA-220ENST00000560998 AHNAK2Q8IVF2 5795 aa3.13□□□□□ -1.91
RABGGTA-220ENST00000560998 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
RABGGTA-220ENST00000560998 KRTAP5-7Q6L8G8 165 aa3.04□□□□□ -1.92
RABGGTA-220ENST00000560998 MUC5ACP98088 5654 aa3.04□□□□□ -1.92
RABGGTA-220ENST00000560998 KRTAP4-11Q9BYQ6 195 aa2.93□□□□□ -1.94
RABGGTA-220ENST00000560998 LCE1BQ5T7P3 118 aa2.92□□□□□ -1.94
RABGGTA-220ENST00000560998 LCE1FQ5T754 118 aa2.91□□□□□ -1.94
RABGGTA-220ENST00000560998 KRTAP5-1Q6L8H4 278 aa2.89□□□□□ -1.95
RABGGTA-220ENST00000560998 KRTAP4-2Q9BYR5 136 aa2.87□□□□□ -1.95
RABGGTA-220ENST00000560998 LCE1CQ5T751 118 aa2.86□□□□□ -1.95
RABGGTA-220ENST00000560998 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
RABGGTA-220ENST00000560998 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.7□□□□□ -1.98
RABGGTA-220ENST00000560998 AHNAKQ09666 5890 aaKnown RBP2.65□□□□□ -1.99
RABGGTA-220ENST00000560998 KRTAP21-1Q3LI58 79 aa2.64□□□□□ -1.99
RABGGTA-220ENST00000560998 KRTAP21-2Q3LI59 83 aa2.63□□□□□ -1.99
RABGGTA-220ENST00000560998 MUC5BQ9HC84 5762 aaPredicted RBP2.62□□□□□ -1.99
RABGGTA-220ENST00000560998 KRTAP9-9Q9BYP9 154 aa2.52□□□□□ -2.01
RABGGTA-220ENST00000560998 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
RABGGTA-220ENST00000560998 KRTAP4-4Q9BYR3 166 aa2.36□□□□□ -2.03
RABGGTA-220ENST00000560998 KRTAP4-12Q9BQ66 201 aa2.32□□□□□ -2.04
RABGGTA-220ENST00000560998 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
RABGGTA-220ENST00000560998 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.08
RABGGTA-220ENST00000560998 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 186.5 ms