RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 KRTAP12-4P60329 112 aa5.34□□□□□ -1.56
TPM1-228ENST00000560975 CRCT1Q9UGL9 99 aa5.32□□□□□ -1.56
TPM1-228ENST00000560975 MT1GP13640 62 aa5.31□□□□□ -1.56
TPM1-228ENST00000560975 LCE2AQ5TA79 106 aaPredicted RBP5.31□□□□□ -1.56
TPM1-228ENST00000560975 SSPOA2VEC9 5147 aa5.18□□□□□ -1.58
TPM1-228ENST00000560975 MUC12Q9UKN1 5478 aa5.17□□□□□ -1.58
TPM1-228ENST00000560975 FCGBPQ9Y6R7 5405 aaPredicted RBP5.14□□□□□ -1.59
TPM1-228ENST00000560975 DSTQ03001 7570 aaKnown RBP5.12□□□□□ -1.59
TPM1-228ENST00000560975 LCE2DQ5TA82 110 aaPredicted RBP5.08□□□□□ -1.6
TPM1-228ENST00000560975 MT1MQ8N339 61 aa5.08□□□□□ -1.6
TPM1-228ENST00000560975 KRTAP4-9Q9BYQ8 210 aa5.05□□□□□ -1.6
TPM1-228ENST00000560975 LCE3BQ5TA77 95 aa5.04□□□□□ -1.6
TPM1-228ENST00000560975 SYNE1Q8NF91 8797 aaKnown RBP5.02□□□□□ -1.61
TPM1-228ENST00000560975 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
TPM1-228ENST00000560975 KRTAP19-6Q3LI70 58 aa4.9□□□□□ -1.62
TPM1-228ENST00000560975 KRTAP9-2Q9BYQ4 174 aa4.86□□□□□ -1.63
TPM1-228ENST00000560975 KRTAP9-7A8MTY7 169 aa4.83□□□□□ -1.64
TPM1-228ENST00000560975 PRM1P04553 51 aa4.79□□□□□ -1.64
TPM1-228ENST00000560975 LCE3DQ9BYE3 92 aa4.78□□□□□ -1.64
TPM1-228ENST00000560975 MT1AP04731 61 aa4.75□□□□□ -1.65
TPM1-228ENST00000560975 KRTAP6-1Q3LI64 71 aa4.75□□□□□ -1.65
TPM1-228ENST00000560975 LCE5AQ5TCM9 118 aa4.75□□□□□ -1.65
TPM1-228ENST00000560975 LCE3EQ5T5B0 92 aa4.74□□□□□ -1.65
TPM1-228ENST00000560975 KRTAP5-5Q701N2 237 aaPredicted RBP4.73□□□□□ -1.65
TPM1-228ENST00000560975 SPRR2FQ96RM1 72 aa4.72□□□□□ -1.65
TPM1-228ENST00000560975 OBSCNQ5VST9 7968 aa4.64□□□□□ -1.67
TPM1-228ENST00000560975 SYNE2Q8WXH0 6885 aaKnown RBP4.63□□□□□ -1.67
TPM1-228ENST00000560975 MACF1Q9UPN3 7388 aaKnown RBP4.54□□□□□ -1.68
TPM1-228ENST00000560975 KRTAP6-2Q3LI66 62 aa4.5□□□□□ -1.69
TPM1-228ENST00000560975 MDN1Q9NU22 5596 aa4.47□□□□□ -1.69
TPM1-228ENST00000560975 KRTAP9-6A0A140TA67 174 aa4.41□□□□□ -1.7
TPM1-228ENST00000560975 KRTAP6-3Q3LI67 103 aa4.37□□□□□ -1.71
TPM1-228ENST00000560975 KRTAP9-4Q9BYQ2 154 aa4.29□□□□□ -1.72
TPM1-228ENST00000560975 LCE1AQ5T7P2 110 aa4.25□□□□□ -1.73
TPM1-228ENST00000560975 KRTAP2-2Q9BYT5 123 aa4.21□□□□□ -1.73
TPM1-228ENST00000560975 SPRR2EP22531 72 aa4.14□□□□□ -1.75
TPM1-228ENST00000560975 SPRR2BP35325 72 aa4.14□□□□□ -1.75
TPM1-228ENST00000560975 SPRR2AP35326 72 aa4.14□□□□□ -1.75
TPM1-228ENST00000560975 MT3P25713 68 aa4.11□□□□□ -1.75
TPM1-228ENST00000560975 KRTAP5-9P26371 169 aa4.1□□□□□ -1.75
TPM1-228ENST00000560975 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.96□□□□□ -1.77
TPM1-228ENST00000560975 SPRR2DP22532 72 aa3.92□□□□□ -1.78
TPM1-228ENST00000560975 LCE1EQ5T753 118 aa3.86□□□□□ -1.79
TPM1-228ENST00000560975 LCE1DQ5T752 114 aa3.71□□□□□ -1.82
TPM1-228ENST00000560975 MUC5ACP98088 5654 aa3.64□□□□□ -1.83
TPM1-228ENST00000560975 KRTAP4-6Q9BYQ5 205 aa3.63□□□□□ -1.83
TPM1-228ENST00000560975 KRTAP4-11Q9BYQ6 195 aa3.62□□□□□ -1.83
TPM1-228ENST00000560975 NEBP20929 6669 aa3.59□□□□□ -1.83
TPM1-228ENST00000560975 MT4P47944 62 aa3.58□□□□□ -1.84
TPM1-228ENST00000560975 KRTAP5-4Q6L8H1 288 aa3.58□□□□□ -1.84
TPM1-228ENST00000560975 KRTAP20-2Q3LI61 65 aa3.45□□□□□ -1.86
TPM1-228ENST00000560975 KRTAP5-2Q701N4 177 aa3.42□□□□□ -1.86
TPM1-228ENST00000560975 LCE1BQ5T7P3 118 aa3.41□□□□□ -1.86
TPM1-228ENST00000560975 KRTAP5-10Q6L8G5 202 aa3.41□□□□□ -1.86
TPM1-228ENST00000560975 LCE4AQ5TA78 99 aa3.37□□□□□ -1.87
TPM1-228ENST00000560975 HMCN1Q96RW7 5635 aa3.34□□□□□ -1.87
TPM1-228ENST00000560975 KRTAP20-1Q3LI63 56 aa3.27□□□□□ -1.89
TPM1-228ENST00000560975 KRTAP5-1Q6L8H4 278 aa3.23□□□□□ -1.89
TPM1-228ENST00000560975 KRTAP5-3Q6L8H2 238 aa3.21□□□□□ -1.9
TPM1-228ENST00000560975 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
TPM1-228ENST00000560975 MUC19Q7Z5P9 8384 aa3.07□□□□□ -1.92
TPM1-228ENST00000560975 LCE1CQ5T751 118 aa3.01□□□□□ -1.93
TPM1-228ENST00000560975 KRTAP21-2Q3LI59 83 aa3□□□□□ -1.93
TPM1-228ENST00000560975 KRTAP21-1Q3LI58 79 aa2.96□□□□□ -1.94
TPM1-228ENST00000560975 KRTAP4-4Q9BYR3 166 aa2.94□□□□□ -1.94
TPM1-228ENST00000560975 LCE1FQ5T754 118 aa2.88□□□□□ -1.95
TPM1-228ENST00000560975 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.82□□□□□ -1.96
TPM1-228ENST00000560975 GPR98Q8WXG9 6306 aa2.73□□□□□ -1.97
TPM1-228ENST00000560975 AHNAK2Q8IVF2 5795 aa2.72□□□□□ -1.97
TPM1-228ENST00000560975 KRTAP5-8O75690 187 aa2.67□□□□□ -1.98
TPM1-228ENST00000560975 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
TPM1-228ENST00000560975 KRTAP9-9Q9BYP9 154 aa2.62□□□□□ -1.99
TPM1-228ENST00000560975 KRTAP4-12Q9BQ66 201 aa2.58□□□□□ -2
TPM1-228ENST00000560975 KRTAP5-7Q6L8G8 165 aa2.57□□□□□ -2
TPM1-228ENST00000560975 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
TPM1-228ENST00000560975 AHNAKQ09666 5890 aaKnown RBP2.36□□□□□ -2.03
TPM1-228ENST00000560975 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
TPM1-228ENST00000560975 MUC16Q8WXI7 14507 aa1.58□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 164.4 ms