RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 KRTAP12-1P59990 96 aa4.36□□□□□ -1.71
TPM1-227ENST00000560970 LCE4AQ5TA78 99 aa4.36□□□□□ -1.71
TPM1-227ENST00000560970 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
TPM1-227ENST00000560970 KRTAP4-8Q9BYQ9 185 aa4.36□□□□□ -1.71
TPM1-227ENST00000560970 KRTAP4-8A0A0G2JLE6 195 aa4.34□□□□□ -1.71
TPM1-227ENST00000560970 KTN1-AS1Q86SY8 53 aa4.33□□□□□ -1.72
TPM1-227ENST00000560970 LCE3BQ5TA77 95 aa4.32□□□□□ -1.72
TPM1-227ENST00000560970 SPINT4Q6UDR6 99 aa4.32□□□□□ -1.72
TPM1-227ENST00000560970 KRTAP10-7P60409 375 aaPredicted RBP4.28□□□□□ -1.72
TPM1-227ENST00000560970 KRTAP10-12P60413 245 aa4.27□□□□□ -1.73
TPM1-227ENST00000560970 ROMO1P60602 79 aa4.26□□□□□ -1.73
TPM1-227ENST00000560970 KRTAP9-9Q9BYP9 154 aa4.24□□□□□ -1.73
TPM1-227ENST00000560970 GPR98Q8WXG9 6306 aa4.24□□□□□ -1.73
TPM1-227ENST00000560970 NDUFAF8A1L188 74 aa4.21□□□□□ -1.74
TPM1-227ENST00000560970 CAMK2N1Q7Z7J9 78 aa4.19□□□□□ -1.74
TPM1-227ENST00000560970 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
TPM1-227ENST00000560970 LCE5AQ5TCM9 118 aa4.13□□□□□ -1.75
TPM1-227ENST00000560970 C10orf95Q9H7T3 257 aa4.11□□□□□ -1.75
TPM1-227ENST00000560970 KRTAP25-1Q3LHN0 102 aa4.09□□□□□ -1.75
TPM1-227ENST00000560970 KRTAP4-9Q9BYQ8 210 aa4.04□□□□□ -1.76
TPM1-227ENST00000560970 KRTAP19-3Q7Z4W3 81 aa4.02□□□□□ -1.77
TPM1-227ENST00000560970 TNP1P09430 55 aa4.01□□□□□ -1.77
TPM1-227ENST00000560970 KRTAP19-7Q3SYF9 63 aa4.01□□□□□ -1.77
TPM1-227ENST00000560970 MT1EP04732 61 aa4□□□□□ -1.77
TPM1-227ENST00000560970 PP632Q6XCG6 107 aa3.96□□□□□ -1.78
TPM1-227ENST00000560970 LCE1DQ5T752 114 aa3.95□□□□□ -1.78
TPM1-227ENST00000560970 KRTAP19-5Q3LI72 72 aa3.93□□□□□ -1.78
TPM1-227ENST00000560970 MT3P25713 68 aa3.92□□□□□ -1.78
TPM1-227ENST00000560970 LCE3AQ5TA76 89 aa3.91□□□□□ -1.78
TPM1-227ENST00000560970 HMCN1Q96RW7 5635 aa3.9□□□□□ -1.79
TPM1-227ENST00000560970 MT1GP13640 62 aa3.87□□□□□ -1.79
TPM1-227ENST00000560970 MT4P47944 62 aa3.87□□□□□ -1.79
TPM1-227ENST00000560970 AHNAK2Q8IVF2 5795 aa3.84□□□□□ -1.8
TPM1-227ENST00000560970 MT1MQ8N339 61 aa3.83□□□□□ -1.8
TPM1-227ENST00000560970 KRTAP4-7Q9BYR0 210 aa3.83□□□□□ -1.8
TPM1-227ENST00000560970 MT1LQ93083 61 aa3.8□□□□□ -1.8
TPM1-227ENST00000560970 KRTAP5-10Q6L8G5 202 aa3.78□□□□□ -1.8
TPM1-227ENST00000560970 KRTAP5-4Q6L8H1 288 aa3.78□□□□□ -1.8
TPM1-227ENST00000560970 KRTAP12-3P60328 96 aa3.72□□□□□ -1.81
TPM1-227ENST00000560970 KRTAP4-3Q9BYR4 195 aa3.71□□□□□ -1.82
TPM1-227ENST00000560970 KRTAP4-2Q9BYR5 136 aa3.69□□□□□ -1.82
TPM1-227ENST00000560970 KRTAP4-11Q9BYQ6 195 aa3.68□□□□□ -1.82
TPM1-227ENST00000560970 KRTAP5-7Q6L8G8 165 aa3.67□□□□□ -1.82
TPM1-227ENST00000560970 KRTAP5-3Q6L8H2 238 aa3.64□□□□□ -1.83
TPM1-227ENST00000560970 KRTAP20-2Q3LI61 65 aa3.58□□□□□ -1.84
TPM1-227ENST00000560970 KRTAP5-5Q701N2 237 aaPredicted RBP3.54□□□□□ -1.84
TPM1-227ENST00000560970 SPRR5A0A1B0GTR4 108 aa3.53□□□□□ -1.84
TPM1-227ENST00000560970 LUZP6Q538Z0 58 aa3.5□□□□□ -1.85
TPM1-227ENST00000560970 KRTAP12-4P60329 112 aa3.48□□□□□ -1.85
TPM1-227ENST00000560970 LCE3CQ5T5A8 94 aa3.44□□□□□ -1.86
TPM1-227ENST00000560970 SYNE1Q8NF91 8797 aaKnown RBP3.42□□□□□ -1.86
TPM1-227ENST00000560970 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
TPM1-227ENST00000560970 KRTAP9-6A8MVA2 160 aa3.3□□□□□ -1.88
TPM1-227ENST00000560970 KRTAP5-2Q701N4 177 aa3.29□□□□□ -1.88
TPM1-227ENST00000560970 MT1AP04731 61 aa3.23□□□□□ -1.89
TPM1-227ENST00000560970 AHNAKQ09666 5890 aaKnown RBP3.23□□□□□ -1.89
TPM1-227ENST00000560970 KRTAP6-1Q3LI64 71 aa3.22□□□□□ -1.89
TPM1-227ENST00000560970 MUC5ACP98088 5654 aa3.22□□□□□ -1.89
TPM1-227ENST00000560970 KRTAP5-8O75690 187 aa3.21□□□□□ -1.9
TPM1-227ENST00000560970 MUC5BQ9HC84 5762 aaPredicted RBP3.15□□□□□ -1.91
TPM1-227ENST00000560970 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
TPM1-227ENST00000560970 KRTAP6-2Q3LI66 62 aa3.1□□□□□ -1.91
TPM1-227ENST00000560970 KRTAP5-1Q6L8H4 278 aa2.96□□□□□ -1.94
TPM1-227ENST00000560970 LCE1EQ5T753 118 aa2.85□□□□□ -1.95
TPM1-227ENST00000560970 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
TPM1-227ENST00000560970 INE1O15225 51 aa2.82□□□□□ -1.96
TPM1-227ENST00000560970 LCE1BQ5T7P3 118 aa2.6□□□□□ -1.99
TPM1-227ENST00000560970 LCE3DQ9BYE3 92 aa2.58□□□□□ -2
TPM1-227ENST00000560970 LCE1CQ5T751 118 aa2.56□□□□□ -2
TPM1-227ENST00000560970 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
TPM1-227ENST00000560970 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
TPM1-227ENST00000560970 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
TPM1-227ENST00000560970 PRM1P04553 51 aa2.2□□□□□ -2.06
TPM1-227ENST00000560970 KRTAP21-2Q3LI59 83 aa2.12□□□□□ -2.07
TPM1-227ENST00000560970 KRTAP4-4Q9BYR3 166 aa2.09□□□□□ -2.07
TPM1-227ENST00000560970 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
TPM1-227ENST00000560970 KRTAP21-1Q3LI58 79 aa1.69□□□□□ -2.14
TPM1-227ENST00000560970 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 92 ms