RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 KRTAP10-7P60409 375 aaPredicted RBP4.5□□□□□ -1.69
SNX1-212ENST00000560861 KRTAP10-12P60413 245 aa4.48□□□□□ -1.69
SNX1-212ENST00000560861 PRAC1Q96KF2 57 aa4.47□□□□□ -1.69
SNX1-212ENST00000560861 KRTAP6-3Q3LI67 103 aa4.46□□□□□ -1.7
SNX1-212ENST00000560861 MUC12Q9UKN1 5478 aa4.46□□□□□ -1.7
SNX1-212ENST00000560861 LCE3AQ5TA76 89 aa4.38□□□□□ -1.71
SNX1-212ENST00000560861 NEBP20929 6669 aa4.37□□□□□ -1.71
SNX1-212ENST00000560861 PP632Q6XCG6 107 aa4.34□□□□□ -1.71
SNX1-212ENST00000560861 KRTAP8-1Q8IUC2 63 aa4.32□□□□□ -1.72
SNX1-212ENST00000560861 SVIPQ8NHG7 77 aa4.3□□□□□ -1.72
SNX1-212ENST00000560861 MDN1Q9NU22 5596 aa4.29□□□□□ -1.72
SNX1-212ENST00000560861 KMT2DO14686 5537 aa4.27□□□□□ -1.73
SNX1-212ENST00000560861 KRTAP5-9P26371 169 aa4.25□□□□□ -1.73
SNX1-212ENST00000560861 KRTAP19-5Q3LI72 72 aa4.22□□□□□ -1.73
SNX1-212ENST00000560861 KRTAP19-7Q3SYF9 63 aa4.22□□□□□ -1.73
SNX1-212ENST00000560861 KRTAP12-3P60328 96 aa4.19□□□□□ -1.74
SNX1-212ENST00000560861 KRTAP20-1Q3LI63 56 aa4.18□□□□□ -1.74
SNX1-212ENST00000560861 MT1EP04732 61 aa4.14□□□□□ -1.75
SNX1-212ENST00000560861 SPRR2FQ96RM1 72 aa4.06□□□□□ -1.76
SNX1-212ENST00000560861 MT1LQ93083 61 aa4.05□□□□□ -1.76
SNX1-212ENST00000560861 KRTAP2-3P0C7H8 128 aa4.03□□□□□ -1.76
SNX1-212ENST00000560861 SPRR2EP22531 72 aa4.03□□□□□ -1.76
SNX1-212ENST00000560861 SPRR2BP35325 72 aa4.03□□□□□ -1.76
SNX1-212ENST00000560861 SPRR2AP35326 72 aa4.03□□□□□ -1.76
SNX1-212ENST00000560861 KRTAP2-4Q9BYR9 128 aa4.03□□□□□ -1.76
SNX1-212ENST00000560861 LCE1AQ5T7P2 110 aa3.99□□□□□ -1.77
SNX1-212ENST00000560861 KRTAP19-3Q7Z4W3 81 aa3.97□□□□□ -1.77
SNX1-212ENST00000560861 MT1GP13640 62 aa3.93□□□□□ -1.78
SNX1-212ENST00000560861 LCE3CQ5T5A8 94 aa3.92□□□□□ -1.78
SNX1-212ENST00000560861 SPRR5A0A1B0GTR4 108 aa3.91□□□□□ -1.78
SNX1-212ENST00000560861 MT1MQ8N339 61 aa3.9□□□□□ -1.79
SNX1-212ENST00000560861 KRTAP2-2Q9BYT5 123 aa3.9□□□□□ -1.79
SNX1-212ENST00000560861 KRTAP2-1Q9BYU5 128 aa3.9□□□□□ -1.79
SNX1-212ENST00000560861 SPRR2DP22532 72 aa3.89□□□□□ -1.79
SNX1-212ENST00000560861 KRTAP4-3Q9BYR4 195 aa3.82□□□□□ -1.8
SNX1-212ENST00000560861 KRTAP9-6A8MVA2 160 aa3.76□□□□□ -1.81
SNX1-212ENST00000560861 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
SNX1-212ENST00000560861 DSTQ03001 7570 aaKnown RBP3.74□□□□□ -1.81
SNX1-212ENST00000560861 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
SNX1-212ENST00000560861 LCE1EQ5T753 118 aa3.61□□□□□ -1.83
SNX1-212ENST00000560861 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.83
SNX1-212ENST00000560861 LUZP6Q538Z0 58 aa3.56□□□□□ -1.84
SNX1-212ENST00000560861 KRTAP5-5Q701N2 237 aaPredicted RBP3.56□□□□□ -1.84
SNX1-212ENST00000560861 MT3P25713 68 aa3.49□□□□□ -1.85
SNX1-212ENST00000560861 HMCN1Q96RW7 5635 aa3.49□□□□□ -1.85
SNX1-212ENST00000560861 NDUFAF8A1L188 74 aa3.47□□□□□ -1.85
SNX1-212ENST00000560861 MT1AP04731 61 aa3.45□□□□□ -1.86
SNX1-212ENST00000560861 KRTAP5-4Q6L8H1 288 aa3.44□□□□□ -1.86
SNX1-212ENST00000560861 AHNAK2Q8IVF2 5795 aa3.42□□□□□ -1.86
SNX1-212ENST00000560861 MT4P47944 62 aa3.41□□□□□ -1.86
SNX1-212ENST00000560861 KRTAP6-1Q3LI64 71 aa3.4□□□□□ -1.87
SNX1-212ENST00000560861 SYNE1Q8NF91 8797 aaKnown RBP3.37□□□□□ -1.87
SNX1-212ENST00000560861 KRTAP5-10Q6L8G5 202 aa3.32□□□□□ -1.88
SNX1-212ENST00000560861 KRTAP12-4P60329 112 aa3.29□□□□□ -1.88
SNX1-212ENST00000560861 KRTAP5-1Q6L8H4 278 aa3.25□□□□□ -1.89
SNX1-212ENST00000560861 A0A0A0MQY5 61 aa3.22□□□□□ -1.89
SNX1-212ENST00000560861 KRTAP20-2Q3LI61 65 aa3.2□□□□□ -1.9
SNX1-212ENST00000560861 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
SNX1-212ENST00000560861 KRTAP6-2Q3LI66 62 aa3.13□□□□□ -1.91
SNX1-212ENST00000560861 KRTAP5-2Q701N4 177 aa3.12□□□□□ -1.91
SNX1-212ENST00000560861 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
SNX1-212ENST00000560861 LCE1FQ5T754 118 aa3.05□□□□□ -1.92
SNX1-212ENST00000560861 LCE3DQ9BYE3 92 aa2.9□□□□□ -1.95
SNX1-212ENST00000560861 OBSCNQ5VST9 7968 aa2.89□□□□□ -1.95
SNX1-212ENST00000560861 INE1O15225 51 aa2.87□□□□□ -1.95
SNX1-212ENST00000560861 KRTAP5-8O75690 187 aa2.86□□□□□ -1.95
SNX1-212ENST00000560861 LCE3EQ5T5B0 92 aa2.83□□□□□ -1.96
SNX1-212ENST00000560861 MUC5BQ9HC84 5762 aaPredicted RBP2.8□□□□□ -1.96
SNX1-212ENST00000560861 MUC5ACP98088 5654 aa2.79□□□□□ -1.96
SNX1-212ENST00000560861 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.97
SNX1-212ENST00000560861 LCE1CQ5T751 118 aa2.54□□□□□ -2
SNX1-212ENST00000560861 LCE1BQ5T7P3 118 aa2.54□□□□□ -2
SNX1-212ENST00000560861 PRM1P04553 51 aa2.42□□□□□ -2.02
SNX1-212ENST00000560861 KRTAP21-2Q3LI59 83 aa2.25□□□□□ -2.05
SNX1-212ENST00000560861 PHGR1C9JFL3 82 aa1.94□□□□□ -2.1
SNX1-212ENST00000560861 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
SNX1-212ENST00000560861 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
SNX1-212ENST00000560861 MUC16Q8WXI7 14507 aa1.3□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 11.3 ms