RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 FCGBPQ9Y6R7 5405 aaPredicted RBP3.79□□□□□ -1.8
CUX1-218ENST00000560541 MUC12Q9UKN1 5478 aa3.79□□□□□ -1.8
CUX1-218ENST00000560541 KRTAP4-3Q9BYR4 195 aa3.76□□□□□ -1.81
CUX1-218ENST00000560541 LOC100996750A0A140TA64 210 aa3.76□□□□□ -1.81
CUX1-218ENST00000560541 DSTQ03001 7570 aaKnown RBP3.74□□□□□ -1.81
CUX1-218ENST00000560541 KRTAP12-4P60329 112 aa3.73□□□□□ -1.81
CUX1-218ENST00000560541 CRCT1Q9UGL9 99 aa3.69□□□□□ -1.82
CUX1-218ENST00000560541 MT1GP13640 62 aa3.69□□□□□ -1.82
CUX1-218ENST00000560541 KRTAP19-4Q3LI73 84 aa3.68□□□□□ -1.82
CUX1-218ENST00000560541 KRTAP19-6Q3LI70 58 aa3.67□□□□□ -1.82
CUX1-218ENST00000560541 MT1MQ8N339 61 aa3.6□□□□□ -1.83
CUX1-218ENST00000560541 KRTAP19-3Q7Z4W3 81 aa3.58□□□□□ -1.84
CUX1-218ENST00000560541 LCE1AQ5T7P2 110 aa3.51□□□□□ -1.85
CUX1-218ENST00000560541 MACF1Q9UPN3 7388 aaKnown RBP3.51□□□□□ -1.85
CUX1-218ENST00000560541 SYNE1Q8NF91 8797 aaKnown RBP3.5□□□□□ -1.85
CUX1-218ENST00000560541 SPRR2FQ96RM1 72 aa3.49□□□□□ -1.85
CUX1-218ENST00000560541 KRTAP6-3Q3LI67 103 aa3.47□□□□□ -1.85
CUX1-218ENST00000560541 LCE3BQ5TA77 95 aa3.45□□□□□ -1.86
CUX1-218ENST00000560541 LCE5AQ5TCM9 118 aa3.43□□□□□ -1.86
CUX1-218ENST00000560541 KRTAP2-2Q9BYT5 123 aa3.43□□□□□ -1.86
CUX1-218ENST00000560541 SYNE2Q8WXH0 6885 aaKnown RBP3.43□□□□□ -1.86
CUX1-218ENST00000560541 KRTAP4-9Q9BYQ8 210 aa3.43□□□□□ -1.86
CUX1-218ENST00000560541 OBSCNQ5VST9 7968 aa3.41□□□□□ -1.86
CUX1-218ENST00000560541 KRTAP9-7A8MTY7 169 aa3.41□□□□□ -1.86
CUX1-218ENST00000560541 PRM1P04553 51 aa3.41□□□□□ -1.86
CUX1-218ENST00000560541 MDN1Q9NU22 5596 aa3.4□□□□□ -1.86
CUX1-218ENST00000560541 LCE1EQ5T753 118 aa3.4□□□□□ -1.87
CUX1-218ENST00000560541 KRTAP9-6A0A140TA67 174 aa3.39□□□□□ -1.87
CUX1-218ENST00000560541 KRTAP9-2Q9BYQ4 174 aa3.32□□□□□ -1.88
CUX1-218ENST00000560541 KRTAP6-1Q3LI64 71 aa3.32□□□□□ -1.88
CUX1-218ENST00000560541 MT1AP04731 61 aa3.21□□□□□ -1.9
CUX1-218ENST00000560541 LCE1DQ5T752 114 aa3.21□□□□□ -1.9
CUX1-218ENST00000560541 LCE3DQ9BYE3 92 aa3.21□□□□□ -1.9
CUX1-218ENST00000560541 KRTAP5-5Q701N2 237 aaPredicted RBP3.2□□□□□ -1.9
CUX1-218ENST00000560541 LCE3EQ5T5B0 92 aa3.16□□□□□ -1.9
CUX1-218ENST00000560541 SPRR2EP22531 72 aa3.12□□□□□ -1.91
CUX1-218ENST00000560541 SPRR2BP35325 72 aa3.12□□□□□ -1.91
CUX1-218ENST00000560541 SPRR2AP35326 72 aa3.12□□□□□ -1.91
CUX1-218ENST00000560541 KRTAP5-9P26371 169 aa3.08□□□□□ -1.92
CUX1-218ENST00000560541 KRTAP6-2Q3LI66 62 aa3.05□□□□□ -1.92
CUX1-218ENST00000560541 KRTAP9-4Q9BYQ2 154 aa3.02□□□□□ -1.93
CUX1-218ENST00000560541 SPRR2DP22532 72 aa2.97□□□□□ -1.93
CUX1-218ENST00000560541 LCE4AQ5TA78 99 aa2.95□□□□□ -1.94
CUX1-218ENST00000560541 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
CUX1-218ENST00000560541 KRTAP9-9Q9BYP9 154 aa2.9□□□□□ -1.95
CUX1-218ENST00000560541 MT3P25713 68 aa2.88□□□□□ -1.95
CUX1-218ENST00000560541 MUC19Q7Z5P9 8384 aa2.86□□□□□ -1.95
CUX1-218ENST00000560541 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.76□□□□□ -1.97
CUX1-218ENST00000560541 KRTAP4-6Q9BYQ5 205 aa2.73□□□□□ -1.97
CUX1-218ENST00000560541 MT4P47944 62 aa2.69□□□□□ -1.98
CUX1-218ENST00000560541 KRTAP5-4Q6L8H1 288 aa2.68□□□□□ -1.98
CUX1-218ENST00000560541 NEBP20929 6669 aa2.67□□□□□ -1.98
CUX1-218ENST00000560541 KRTAP4-11Q9BYQ6 195 aa2.59□□□□□ -2
CUX1-218ENST00000560541 HMCN1Q96RW7 5635 aa2.58□□□□□ -2
CUX1-218ENST00000560541 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
CUX1-218ENST00000560541 MUC5ACP98088 5654 aa2.54□□□□□ -2
CUX1-218ENST00000560541 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
CUX1-218ENST00000560541 KRTAP4-12Q9BQ66 201 aa2.43□□□□□ -2.02
CUX1-218ENST00000560541 LCE1BQ5T7P3 118 aa2.42□□□□□ -2.02
CUX1-218ENST00000560541 KRTAP5-3Q6L8H2 238 aa2.41□□□□□ -2.02
CUX1-218ENST00000560541 KRTAP20-1Q3LI63 56 aa2.35□□□□□ -2.03
CUX1-218ENST00000560541 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
CUX1-218ENST00000560541 LCE1CQ5T751 118 aa2.25□□□□□ -2.05
CUX1-218ENST00000560541 KRTAP5-1Q6L8H4 278 aa2.24□□□□□ -2.05
CUX1-218ENST00000560541 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
CUX1-218ENST00000560541 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
CUX1-218ENST00000560541 KRTAP21-1Q3LI58 79 aa2.05□□□□□ -2.08
CUX1-218ENST00000560541 KRTAP4-4Q9BYR3 166 aa2.05□□□□□ -2.08
CUX1-218ENST00000560541 AHNAK2Q8IVF2 5795 aa2.02□□□□□ -2.09
CUX1-218ENST00000560541 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.02□□□□□ -2.09
CUX1-218ENST00000560541 KRTAP5-8O75690 187 aa2□□□□□ -2.09
CUX1-218ENST00000560541 MUC5BQ9HC84 5762 aaPredicted RBP1.97□□□□□ -2.09
CUX1-218ENST00000560541 KRTAP5-7Q6L8G8 165 aa1.9□□□□□ -2.11
CUX1-218ENST00000560541 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
CUX1-218ENST00000560541 GPR98Q8WXG9 6306 aa1.82□□□□□ -2.12
CUX1-218ENST00000560541 AHNAKQ09666 5890 aaKnown RBP1.66□□□□□ -2.14
CUX1-218ENST00000560541 PHGR1C9JFL3 82 aa1.62□□□□□ -2.15
CUX1-218ENST00000560541 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 11.7 ms