RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 SPRR2DP22532 72 aa3.68□□□□□ -1.82
USP3-216ENST00000559873 KRTAP12-3P60328 96 aa3.67□□□□□ -1.82
USP3-216ENST00000559873 PP632Q6XCG6 107 aa3.66□□□□□ -1.82
USP3-216ENST00000559873 KRTAP19-3Q7Z4W3 81 aa3.66□□□□□ -1.82
USP3-216ENST00000559873 KRTAP20-1Q3LI63 56 aa3.64□□□□□ -1.83
USP3-216ENST00000559873 LCE3BQ5TA77 95 aa3.64□□□□□ -1.83
USP3-216ENST00000559873 LCE5AQ5TCM9 118 aa3.62□□□□□ -1.83
USP3-216ENST00000559873 MT1GP13640 62 aa3.61□□□□□ -1.83
USP3-216ENST00000559873 KRTAP2-3P0C7H8 128 aa3.6□□□□□ -1.83
USP3-216ENST00000559873 MT1LQ93083 61 aa3.6□□□□□ -1.83
USP3-216ENST00000559873 KRTAP2-4Q9BYR9 128 aa3.6□□□□□ -1.83
USP3-216ENST00000559873 KRTAP9-9Q9BYP9 154 aa3.59□□□□□ -1.83
USP3-216ENST00000559873 KRTAP9-4Q9BYQ2 154 aa3.59□□□□□ -1.83
USP3-216ENST00000559873 PMAIP1Q13794 54 aa3.56□□□□□ -1.84
USP3-216ENST00000559873 KRTAP4-12Q9BQ66 201 aa3.55□□□□□ -1.84
USP3-216ENST00000559873 MT1MQ8N339 61 aa3.53□□□□□ -1.84
USP3-216ENST00000559873 PRO0628Q9UI54 55 aa3.53□□□□□ -1.84
USP3-216ENST00000559873 KRTAP19-4Q3LI73 84 aa3.52□□□□□ -1.85
USP3-216ENST00000559873 KRTAP4-7Q9BYR0 210 aa3.51□□□□□ -1.85
USP3-216ENST00000559873 DSTQ03001 7570 aaKnown RBP3.51□□□□□ -1.85
USP3-216ENST00000559873 KRTAP15-1Q3LI76 137 aa3.5□□□□□ -1.85
USP3-216ENST00000559873 KRTAP2-2Q9BYT5 123 aa3.5□□□□□ -1.85
USP3-216ENST00000559873 KRTAP2-1Q9BYU5 128 aa3.5□□□□□ -1.85
USP3-216ENST00000559873 LCE1DQ5T752 114 aa3.4□□□□□ -1.87
USP3-216ENST00000559873 LCE3CQ5T5A8 94 aa3.38□□□□□ -1.87
USP3-216ENST00000559873 KRTAP4-3Q9BYR4 195 aa3.38□□□□□ -1.87
USP3-216ENST00000559873 KRTAP4-2Q9BYR5 136 aa3.36□□□□□ -1.87
USP3-216ENST00000559873 KRTAP4-9Q9BYQ8 210 aa3.35□□□□□ -1.87
USP3-216ENST00000559873 KTN1-AS1Q86SY8 53 aa3.33□□□□□ -1.88
USP3-216ENST00000559873 PRAC1Q96KF2 57 aa3.33□□□□□ -1.88
USP3-216ENST00000559873 LCE4AQ5TA78 99 aa3.27□□□□□ -1.89
USP3-216ENST00000559873 KRTAP5-3Q6L8H2 238 aa3.24□□□□□ -1.89
USP3-216ENST00000559873 KRTAP5-4Q6L8H1 288 aa3.21□□□□□ -1.9
USP3-216ENST00000559873 KRTAP5-5Q701N2 237 aaPredicted RBP3.19□□□□□ -1.9
USP3-216ENST00000559873 SVIPQ8NHG7 77 aa3.19□□□□□ -1.9
USP3-216ENST00000559873 KRTAP4-11Q9BYQ6 195 aa3.18□□□□□ -1.9
USP3-216ENST00000559873 MT4P47944 62 aa3.16□□□□□ -1.9
USP3-216ENST00000559873 HMCN1Q96RW7 5635 aa3.15□□□□□ -1.91
USP3-216ENST00000559873 SYNE1Q8NF91 8797 aaKnown RBP3.14□□□□□ -1.91
USP3-216ENST00000559873 KRTAP9-6A8MVA2 160 aa3.13□□□□□ -1.91
USP3-216ENST00000559873 KRTAP12-4P60329 112 aa3.11□□□□□ -1.91
USP3-216ENST00000559873 MT1AP04731 61 aa3.09□□□□□ -1.91
USP3-216ENST00000559873 SPRR5A0A1B0GTR4 108 aa3.07□□□□□ -1.92
USP3-216ENST00000559873 GPR98Q8WXG9 6306 aa3.03□□□□□ -1.92
USP3-216ENST00000559873 KRTAP20-2Q3LI61 65 aa3.02□□□□□ -1.93
USP3-216ENST00000559873 KRTAP6-1Q3LI64 71 aa3.01□□□□□ -1.93
USP3-216ENST00000559873 AHNAK2Q8IVF2 5795 aa2.95□□□□□ -1.94
USP3-216ENST00000559873 H3BS24 57 aa2.87□□□□□ -1.95
USP3-216ENST00000559873 LUZP6Q538Z0 58 aa2.87□□□□□ -1.95
USP3-216ENST00000559873 KRTAP5-2Q701N4 177 aa2.86□□□□□ -1.95
USP3-216ENST00000559873 KRTAP6-2Q3LI66 62 aa2.84□□□□□ -1.95
USP3-216ENST00000559873 MT3P25713 68 aa2.83□□□□□ -1.96
USP3-216ENST00000559873 KRTAP5-10Q6L8G5 202 aa2.8□□□□□ -1.96
USP3-216ENST00000559873 OBSCNQ5VST9 7968 aa2.68□□□□□ -1.98
USP3-216ENST00000559873 KRTAP5-7Q6L8G8 165 aa2.67□□□□□ -1.98
USP3-216ENST00000559873 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
USP3-216ENST00000559873 LCE1EQ5T753 118 aa2.53□□□□□ -2
USP3-216ENST00000559873 MUC5ACP98088 5654 aa2.53□□□□□ -2.01
USP3-216ENST00000559873 KRTAP5-1Q6L8H4 278 aa2.5□□□□□ -2.01
USP3-216ENST00000559873 LCE3DQ9BYE3 92 aa2.5□□□□□ -2.01
USP3-216ENST00000559873 NDUFAF8A1L188 74 aa2.49□□□□□ -2.01
USP3-216ENST00000559873 MUC5BQ9HC84 5762 aaPredicted RBP2.42□□□□□ -2.02
USP3-216ENST00000559873 AHNAKQ09666 5890 aaKnown RBP2.4□□□□□ -2.02
USP3-216ENST00000559873 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
USP3-216ENST00000559873 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.36□□□□□ -2.03
USP3-216ENST00000559873 LCE1BQ5T7P3 118 aa2.35□□□□□ -2.03
USP3-216ENST00000559873 LCE1CQ5T751 118 aa2.34□□□□□ -2.03
USP3-216ENST00000559873 A0A0A0MQY5 61 aa2.18□□□□□ -2.06
USP3-216ENST00000559873 KRTAP5-11Q6L8G4 156 aa2.14□□□□□ -2.07
USP3-216ENST00000559873 INE1O15225 51 aa2.1□□□□□ -2.07
USP3-216ENST00000559873 LCE1FQ5T754 118 aa2□□□□□ -2.09
USP3-216ENST00000559873 KRTAP21-2Q3LI59 83 aa1.98□□□□□ -2.09
USP3-216ENST00000559873 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
USP3-216ENST00000559873 PRM1P04553 51 aa1.93□□□□□ -2.1
USP3-216ENST00000559873 PHGR1C9JFL3 82 aa1.79□□□□□ -2.12
USP3-216ENST00000559873 MUC19Q7Z5P9 8384 aa1.67□□□□□ -2.14
USP3-216ENST00000559873 KRTAP21-1Q3LI58 79 aa1.26□□□□□ -2.21
USP3-216ENST00000559873 MUC16Q8WXI7 14507 aa1.18□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 59.7 ms