RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 KRTAP9-6A0A140TA67 174 aa3.87□□□□□ -1.79
USP3-206ENST00000558157 KRTAP19-5Q3LI72 72 aa3.85□□□□□ -1.79
USP3-206ENST00000558157 KRTAP19-4Q3LI73 84 aa3.85□□□□□ -1.79
USP3-206ENST00000558157 KRTAP9-6A8MVA2 160 aa3.82□□□□□ -1.8
USP3-206ENST00000558157 MACF1Q9UPN3 7388 aaKnown RBP3.8□□□□□ -1.8
USP3-206ENST00000558157 KRTAP19-7Q3SYF9 63 aa3.76□□□□□ -1.81
USP3-206ENST00000558157 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.73□□□□□ -1.81
USP3-206ENST00000558157 MT1EP04732 61 aa3.7□□□□□ -1.82
USP3-206ENST00000558157 SYNE2Q8WXH0 6885 aaKnown RBP3.69□□□□□ -1.82
USP3-206ENST00000558157 SPRR2FQ96RM1 72 aa3.68□□□□□ -1.82
USP3-206ENST00000558157 MUC12Q9UKN1 5478 aa3.65□□□□□ -1.83
USP3-206ENST00000558157 KRTAP5-9P26371 169 aa3.64□□□□□ -1.83
USP3-206ENST00000558157 MT1LQ93083 61 aa3.62□□□□□ -1.83
USP3-206ENST00000558157 KRTAP6-3Q3LI67 103 aa3.61□□□□□ -1.83
USP3-206ENST00000558157 KRTAP19-3Q7Z4W3 81 aa3.56□□□□□ -1.84
USP3-206ENST00000558157 MDN1Q9NU22 5596 aa3.55□□□□□ -1.84
USP3-206ENST00000558157 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
USP3-206ENST00000558157 KRTAP9-7A8MTY7 169 aa3.54□□□□□ -1.84
USP3-206ENST00000558157 KRTAP12-4P60329 112 aa3.53□□□□□ -1.84
USP3-206ENST00000558157 LCE1AQ5T7P2 110 aa3.52□□□□□ -1.85
USP3-206ENST00000558157 SPRR2EP22531 72 aa3.51□□□□□ -1.85
USP3-206ENST00000558157 SPRR2BP35325 72 aa3.51□□□□□ -1.85
USP3-206ENST00000558157 SPRR2AP35326 72 aa3.51□□□□□ -1.85
USP3-206ENST00000558157 MT1GP13640 62 aa3.5□□□□□ -1.85
USP3-206ENST00000558157 LCE5AQ5TCM9 118 aa3.5□□□□□ -1.85
USP3-206ENST00000558157 MT1MQ8N339 61 aa3.49□□□□□ -1.85
USP3-206ENST00000558157 KRTAP5-3Q6L8H2 238 aa3.44□□□□□ -1.86
USP3-206ENST00000558157 KRTAP4-3Q9BYR4 195 aa3.44□□□□□ -1.86
USP3-206ENST00000558157 KRTAP4-12Q9BQ66 201 aa3.42□□□□□ -1.86
USP3-206ENST00000558157 NEBP20929 6669 aa3.39□□□□□ -1.87
USP3-206ENST00000558157 SPRR2DP22532 72 aa3.39□□□□□ -1.87
USP3-206ENST00000558157 LCE3BQ5TA77 95 aa3.36□□□□□ -1.87
USP3-206ENST00000558157 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
USP3-206ENST00000558157 MT1AP04731 61 aa3.28□□□□□ -1.88
USP3-206ENST00000558157 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
USP3-206ENST00000558157 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
USP3-206ENST00000558157 LCE4AQ5TA78 99 aa3.24□□□□□ -1.89
USP3-206ENST00000558157 PRM1P04553 51 aa3.17□□□□□ -1.9
USP3-206ENST00000558157 LCE3EQ5T5B0 92 aa3.17□□□□□ -1.9
USP3-206ENST00000558157 LCE3DQ9BYE3 92 aa3.15□□□□□ -1.9
USP3-206ENST00000558157 KRTAP5-5Q701N2 237 aaPredicted RBP3.15□□□□□ -1.91
USP3-206ENST00000558157 KRTAP20-1Q3LI63 56 aa3.14□□□□□ -1.91
USP3-206ENST00000558157 LCE1DQ5T752 114 aa3.14□□□□□ -1.91
USP3-206ENST00000558157 KRTAP2-2Q9BYT5 123 aa3.09□□□□□ -1.92
USP3-206ENST00000558157 KRTAP4-9Q9BYQ8 210 aa3.08□□□□□ -1.92
USP3-206ENST00000558157 KRTAP6-1Q3LI64 71 aa3.05□□□□□ -1.92
USP3-206ENST00000558157 KRTAP5-4Q6L8H1 288 aa3.03□□□□□ -1.92
USP3-206ENST00000558157 KRTAP4-2Q9BYR5 136 aa3.03□□□□□ -1.92
USP3-206ENST00000558157 SYNE1Q8NF91 8797 aaKnown RBP2.99□□□□□ -1.93
USP3-206ENST00000558157 MT4P47944 62 aa2.95□□□□□ -1.94
USP3-206ENST00000558157 KRTAP6-2Q3LI66 62 aa2.94□□□□□ -1.94
USP3-206ENST00000558157 KRTAP4-11Q9BYQ6 195 aa2.94□□□□□ -1.94
USP3-206ENST00000558157 HMCN1Q96RW7 5635 aa2.88□□□□□ -1.95
USP3-206ENST00000558157 KRTAP20-2Q3LI61 65 aa2.85□□□□□ -1.95
USP3-206ENST00000558157 MT3P25713 68 aa2.77□□□□□ -1.97
USP3-206ENST00000558157 KRTAP5-2Q701N4 177 aa2.74□□□□□ -1.97
USP3-206ENST00000558157 LCE1EQ5T753 118 aa2.67□□□□□ -1.98
USP3-206ENST00000558157 AHNAK2Q8IVF2 5795 aa2.6□□□□□ -1.99
USP3-206ENST00000558157 LCE1FQ5T754 118 aa2.53□□□□□ -2
USP3-206ENST00000558157 OBSCNQ5VST9 7968 aa2.53□□□□□ -2
USP3-206ENST00000558157 GPR98Q8WXG9 6306 aa2.47□□□□□ -2.01
USP3-206ENST00000558157 KRTAP5-10Q6L8G5 202 aa2.44□□□□□ -2.02
USP3-206ENST00000558157 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
USP3-206ENST00000558157 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.39□□□□□ -2.03
USP3-206ENST00000558157 KRTAP5-1Q6L8H4 278 aa2.38□□□□□ -2.03
USP3-206ENST00000558157 MUC5ACP98088 5654 aa2.33□□□□□ -2.04
USP3-206ENST00000558157 LCE1BQ5T7P3 118 aa2.29□□□□□ -2.04
USP3-206ENST00000558157 KRTAP5-7Q6L8G8 165 aa2.29□□□□□ -2.04
USP3-206ENST00000558157 LCE1CQ5T751 118 aa2.25□□□□□ -2.05
USP3-206ENST00000558157 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
USP3-206ENST00000558157 MUC5BQ9HC84 5762 aaPredicted RBP2.09□□□□□ -2.07
USP3-206ENST00000558157 AHNAKQ09666 5890 aaKnown RBP2□□□□□ -2.09
USP3-206ENST00000558157 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
USP3-206ENST00000558157 KRTAP21-2Q3LI59 83 aa1.99□□□□□ -2.09
USP3-206ENST00000558157 KRTAP4-4Q9BYR3 166 aa1.91□□□□□ -2.1
USP3-206ENST00000558157 PHGR1C9JFL3 82 aa1.71□□□□□ -2.14
USP3-206ENST00000558157 MUC19Q7Z5P9 8384 aa1.69□□□□□ -2.14
USP3-206ENST00000558157 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 12.5 ms