RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 KRTAP19-3Q7Z4W3 81 aa4.81□□□□□ -1.64
ARHGEF40-207ENST00000556399 KRTAP2-3P0C7H8 128 aa4.77□□□□□ -1.65
ARHGEF40-207ENST00000556399 KRTAP2-4Q9BYR9 128 aa4.77□□□□□ -1.65
ARHGEF40-207ENST00000556399 KRTAP2-1Q9BYU5 128 aa4.77□□□□□ -1.65
ARHGEF40-207ENST00000556399 LOC100996750A0A140TA64 210 aa4.77□□□□□ -1.65
ARHGEF40-207ENST00000556399 KRTAP9-6A8MVA2 160 aa4.74□□□□□ -1.65
ARHGEF40-207ENST00000556399 LCE3DQ9BYE3 92 aa4.73□□□□□ -1.65
ARHGEF40-207ENST00000556399 KRTAP4-3Q9BYR4 195 aa4.72□□□□□ -1.65
ARHGEF40-207ENST00000556399 MT1MQ8N339 61 aa4.71□□□□□ -1.66
ARHGEF40-207ENST00000556399 LCE3EQ5T5B0 92 aa4.67□□□□□ -1.66
ARHGEF40-207ENST00000556399 LCE2AQ5TA79 106 aaPredicted RBP4.64□□□□□ -1.67
ARHGEF40-207ENST00000556399 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
ARHGEF40-207ENST00000556399 KRTAP19-6Q3LI70 58 aa4.62□□□□□ -1.67
ARHGEF40-207ENST00000556399 LCE2DQ5TA82 110 aaPredicted RBP4.53□□□□□ -1.68
ARHGEF40-207ENST00000556399 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
ARHGEF40-207ENST00000556399 KMT2DO14686 5537 aa4.49□□□□□ -1.69
ARHGEF40-207ENST00000556399 KRTAP9-2Q9BYQ4 174 aa4.47□□□□□ -1.69
ARHGEF40-207ENST00000556399 PRM1P04553 51 aa4.45□□□□□ -1.7
ARHGEF40-207ENST00000556399 KRTAP4-9Q9BYQ8 210 aa4.43□□□□□ -1.7
ARHGEF40-207ENST00000556399 USH2AO75445 5202 aa4.41□□□□□ -1.7
ARHGEF40-207ENST00000556399 MT3P25713 68 aa4.37□□□□□ -1.71
ARHGEF40-207ENST00000556399 MT1AP04731 61 aa4.33□□□□□ -1.72
ARHGEF40-207ENST00000556399 KRTAP9-6A0A140TA67 174 aa4.31□□□□□ -1.72
ARHGEF40-207ENST00000556399 FCGBPQ9Y6R7 5405 aaPredicted RBP4.29□□□□□ -1.72
ARHGEF40-207ENST00000556399 MT4P47944 62 aa4.29□□□□□ -1.72
ARHGEF40-207ENST00000556399 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
ARHGEF40-207ENST00000556399 LCE5AQ5TCM9 118 aa4.23□□□□□ -1.73
ARHGEF40-207ENST00000556399 SYNE2Q8WXH0 6885 aaKnown RBP4.22□□□□□ -1.73
ARHGEF40-207ENST00000556399 DSTQ03001 7570 aaKnown RBP4.18□□□□□ -1.74
ARHGEF40-207ENST00000556399 KRTAP20-1Q3LI63 56 aa4.11□□□□□ -1.75
ARHGEF40-207ENST00000556399 OBSCNQ5VST9 7968 aa4.1□□□□□ -1.75
ARHGEF40-207ENST00000556399 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
ARHGEF40-207ENST00000556399 KRTAP9-7A8MTY7 169 aa4.09□□□□□ -1.75
ARHGEF40-207ENST00000556399 LCE1DQ5T752 114 aa4.09□□□□□ -1.75
ARHGEF40-207ENST00000556399 LCE1AQ5T7P2 110 aa4.08□□□□□ -1.76
ARHGEF40-207ENST00000556399 KRTAP6-2Q3LI66 62 aa4.06□□□□□ -1.76
ARHGEF40-207ENST00000556399 KRTAP6-3Q3LI67 103 aa4.05□□□□□ -1.76
ARHGEF40-207ENST00000556399 MUC12Q9UKN1 5478 aa4.04□□□□□ -1.76
ARHGEF40-207ENST00000556399 KRTAP9-4Q9BYQ2 154 aa4□□□□□ -1.77
ARHGEF40-207ENST00000556399 SSPOA2VEC9 5147 aa3.99□□□□□ -1.77
ARHGEF40-207ENST00000556399 LCE4AQ5TA78 99 aa3.88□□□□□ -1.79
ARHGEF40-207ENST00000556399 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.87□□□□□ -1.79
ARHGEF40-207ENST00000556399 KRTAP2-2Q9BYT5 123 aa3.85□□□□□ -1.79
ARHGEF40-207ENST00000556399 MACF1Q9UPN3 7388 aaKnown RBP3.81□□□□□ -1.8
ARHGEF40-207ENST00000556399 KRTAP5-5Q701N2 237 aaPredicted RBP3.62□□□□□ -1.83
ARHGEF40-207ENST00000556399 KRTAP5-9P26371 169 aa3.6□□□□□ -1.83
ARHGEF40-207ENST00000556399 LCE1CQ5T751 118 aa3.54□□□□□ -1.84
ARHGEF40-207ENST00000556399 LCE1EQ5T753 118 aa3.54□□□□□ -1.84
ARHGEF40-207ENST00000556399 LCE1FQ5T754 118 aa3.54□□□□□ -1.84
ARHGEF40-207ENST00000556399 GPR98Q8WXG9 6306 aa3.46□□□□□ -1.86
ARHGEF40-207ENST00000556399 MDN1Q9NU22 5596 aa3.42□□□□□ -1.86
ARHGEF40-207ENST00000556399 KRTAP9-9Q9BYP9 154 aa3.4□□□□□ -1.86
ARHGEF40-207ENST00000556399 NEBP20929 6669 aa3.4□□□□□ -1.87
ARHGEF40-207ENST00000556399 KRTAP4-6Q9BYQ5 205 aa3.36□□□□□ -1.87
ARHGEF40-207ENST00000556399 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
ARHGEF40-207ENST00000556399 KRTAP4-11Q9BYQ6 195 aa3.31□□□□□ -1.88
ARHGEF40-207ENST00000556399 KRTAP20-2Q3LI61 65 aa3.27□□□□□ -1.89
ARHGEF40-207ENST00000556399 KRTAP5-4Q6L8H1 288 aa3.07□□□□□ -1.92
ARHGEF40-207ENST00000556399 KRTAP4-4Q9BYR3 166 aa2.89□□□□□ -1.95
ARHGEF40-207ENST00000556399 MUC5ACP98088 5654 aa2.88□□□□□ -1.95
ARHGEF40-207ENST00000556399 KRTAP5-10Q6L8G5 202 aa2.77□□□□□ -1.97
ARHGEF40-207ENST00000556399 KRTAP4-12Q9BQ66 201 aa2.77□□□□□ -1.97
ARHGEF40-207ENST00000556399 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
ARHGEF40-207ENST00000556399 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
ARHGEF40-207ENST00000556399 AHNAK2Q8IVF2 5795 aa2.75□□□□□ -1.97
ARHGEF40-207ENST00000556399 HMCN1Q96RW7 5635 aa2.74□□□□□ -1.97
ARHGEF40-207ENST00000556399 KRTAP5-3Q6L8H2 238 aa2.65□□□□□ -1.99
ARHGEF40-207ENST00000556399 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
ARHGEF40-207ENST00000556399 KRTAP21-2Q3LI59 83 aa2.39□□□□□ -2.03
ARHGEF40-207ENST00000556399 KRTAP5-8O75690 187 aa2.37□□□□□ -2.03
ARHGEF40-207ENST00000556399 KRTAP5-11Q6L8G4 156 aa2.27□□□□□ -2.05
ARHGEF40-207ENST00000556399 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
ARHGEF40-207ENST00000556399 MUC5BQ9HC84 5762 aaPredicted RBP2.26□□□□□ -2.05
ARHGEF40-207ENST00000556399 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.24□□□□□ -2.05
ARHGEF40-207ENST00000556399 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
ARHGEF40-207ENST00000556399 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
ARHGEF40-207ENST00000556399 KRTAP5-7Q6L8G8 165 aa1.94□□□□□ -2.1
ARHGEF40-207ENST00000556399 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 153.7 ms