RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 MT3P25713 68 aa5.27□□□□□ -1.57
SYNE3-204ENST00000555759 TNXBP22105 4242 aa5.21□□□□□ -1.57
SYNE3-204ENST00000555759 LOC100996750A0A140TA64 210 aa5.2□□□□□ -1.58
SYNE3-204ENST00000555759 KRTAP9-2Q9BYQ4 174 aa5.2□□□□□ -1.58
SYNE3-204ENST00000555759 KRTAP19-7Q3SYF9 63 aa5.16□□□□□ -1.58
SYNE3-204ENST00000555759 ABCA13Q86UQ4 5058 aa5.11□□□□□ -1.59
SYNE3-204ENST00000555759 LCE2DQ5TA82 110 aaPredicted RBP5.08□□□□□ -1.6
SYNE3-204ENST00000555759 KRTAP4-3Q9BYR4 195 aa5.08□□□□□ -1.6
SYNE3-204ENST00000555759 FSIP2Q5CZC0 6907 aa5.07□□□□□ -1.6
SYNE3-204ENST00000555759 MT1AP04731 61 aa5.07□□□□□ -1.6
SYNE3-204ENST00000555759 KRTAP19-6Q3LI70 58 aa5.05□□□□□ -1.6
SYNE3-204ENST00000555759 SYNE1Q8NF91 8797 aaKnown RBP4.99□□□□□ -1.61
SYNE3-204ENST00000555759 UBR4Q5T4S7 5183 aa4.98□□□□□ -1.61
SYNE3-204ENST00000555759 MT4P47944 62 aa4.97□□□□□ -1.61
SYNE3-204ENST00000555759 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
SYNE3-204ENST00000555759 KRTAP9-6A0A140TA67 174 aa4.95□□□□□ -1.62
SYNE3-204ENST00000555759 KRTAP4-9Q9BYQ8 210 aa4.92□□□□□ -1.62
SYNE3-204ENST00000555759 LCE2AQ5TA79 106 aaPredicted RBP4.9□□□□□ -1.63
SYNE3-204ENST00000555759 FAT4Q6V0I7 4981 aa4.89□□□□□ -1.63
SYNE3-204ENST00000555759 RNF213Q63HN8 5207 aa4.86□□□□□ -1.63
SYNE3-204ENST00000555759 HMCN2Q8NDA2 5059 aa4.82□□□□□ -1.64
SYNE3-204ENST00000555759 KRTAP6-2Q3LI66 62 aa4.79□□□□□ -1.64
SYNE3-204ENST00000555759 LCE1BQ5T7P3 118 aa4.77□□□□□ -1.65
SYNE3-204ENST00000555759 LCE1DQ5T752 114 aa4.76□□□□□ -1.65
SYNE3-204ENST00000555759 MUC2Q02817 5179 aa4.72□□□□□ -1.65
SYNE3-204ENST00000555759 KRTAP6-1Q3LI64 71 aa4.69□□□□□ -1.66
SYNE3-204ENST00000555759 KRTAP9-7A8MTY7 169 aa4.66□□□□□ -1.66
SYNE3-204ENST00000555759 SYNE2Q8WXH0 6885 aaKnown RBP4.64□□□□□ -1.67
SYNE3-204ENST00000555759 KRTAP20-1Q3LI63 56 aa4.63□□□□□ -1.67
SYNE3-204ENST00000555759 KRTAP9-4Q9BYQ2 154 aa4.62□□□□□ -1.67
SYNE3-204ENST00000555759 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
SYNE3-204ENST00000555759 OBSCNQ5VST9 7968 aa4.52□□□□□ -1.69
SYNE3-204ENST00000555759 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
SYNE3-204ENST00000555759 KRTAP6-3Q3LI67 103 aa4.51□□□□□ -1.69
SYNE3-204ENST00000555759 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.48□□□□□ -1.69
SYNE3-204ENST00000555759 KRTAP2-2Q9BYT5 123 aa4.43□□□□□ -1.7
SYNE3-204ENST00000555759 LCE4AQ5TA78 99 aa4.22□□□□□ -1.73
SYNE3-204ENST00000555759 USH2AO75445 5202 aa4.13□□□□□ -1.75
SYNE3-204ENST00000555759 FCGBPQ9Y6R7 5405 aaPredicted RBP4.07□□□□□ -1.76
SYNE3-204ENST00000555759 DSTQ03001 7570 aaKnown RBP4.07□□□□□ -1.76
SYNE3-204ENST00000555759 MACF1Q9UPN3 7388 aaKnown RBP3.98□□□□□ -1.77
SYNE3-204ENST00000555759 LCE1CQ5T751 118 aa3.98□□□□□ -1.77
SYNE3-204ENST00000555759 LCE1EQ5T753 118 aa3.98□□□□□ -1.77
SYNE3-204ENST00000555759 LCE1FQ5T754 118 aa3.98□□□□□ -1.77
SYNE3-204ENST00000555759 KRTAP4-11Q9BYQ6 195 aa3.94□□□□□ -1.78
SYNE3-204ENST00000555759 KMT2DO14686 5537 aa3.94□□□□□ -1.78
SYNE3-204ENST00000555759 NEBP20929 6669 aa3.89□□□□□ -1.79
SYNE3-204ENST00000555759 KRTAP5-5Q701N2 237 aaPredicted RBP3.85□□□□□ -1.79
SYNE3-204ENST00000555759 KRTAP5-9P26371 169 aa3.77□□□□□ -1.81
SYNE3-204ENST00000555759 KRTAP9-9Q9BYP9 154 aa3.76□□□□□ -1.81
SYNE3-204ENST00000555759 SSPOA2VEC9 5147 aa3.74□□□□□ -1.81
SYNE3-204ENST00000555759 GPR98Q8WXG9 6306 aa3.71□□□□□ -1.82
SYNE3-204ENST00000555759 KRTAP4-6Q9BYQ5 205 aa3.7□□□□□ -1.82
SYNE3-204ENST00000555759 MDN1Q9NU22 5596 aa3.67□□□□□ -1.82
SYNE3-204ENST00000555759 MUC12Q9UKN1 5478 aa3.65□□□□□ -1.82
SYNE3-204ENST00000555759 KRTAP20-2Q3LI61 65 aa3.57□□□□□ -1.84
SYNE3-204ENST00000555759 MUC19Q7Z5P9 8384 aa3.57□□□□□ -1.84
SYNE3-204ENST00000555759 KRTAP4-4Q9BYR3 166 aa3.32□□□□□ -1.88
SYNE3-204ENST00000555759 KRTAP4-12Q9BQ66 201 aa3.3□□□□□ -1.88
SYNE3-204ENST00000555759 KRTAP4-2Q9BYR5 136 aa3.3□□□□□ -1.88
SYNE3-204ENST00000555759 KRTAP5-4Q6L8H1 288 aa3.3□□□□□ -1.88
SYNE3-204ENST00000555759 MUC5ACP98088 5654 aa3.01□□□□□ -1.93
SYNE3-204ENST00000555759 KRTAP5-3Q6L8H2 238 aa3.01□□□□□ -1.93
SYNE3-204ENST00000555759 AHNAK2Q8IVF2 5795 aa2.99□□□□□ -1.93
SYNE3-204ENST00000555759 KRTAP5-10Q6L8G5 202 aa2.99□□□□□ -1.93
SYNE3-204ENST00000555759 HMCN1Q96RW7 5635 aa2.87□□□□□ -1.95
SYNE3-204ENST00000555759 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
SYNE3-204ENST00000555759 KRTAP5-2Q701N4 177 aa2.71□□□□□ -1.98
SYNE3-204ENST00000555759 KRTAP21-1Q3LI58 79 aa2.56□□□□□ -2
SYNE3-204ENST00000555759 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
SYNE3-204ENST00000555759 KRTAP5-1Q6L8H4 278 aa2.51□□□□□ -2.01
SYNE3-204ENST00000555759 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
SYNE3-204ENST00000555759 AHNAKQ09666 5890 aaKnown RBP2.45□□□□□ -2.02
SYNE3-204ENST00000555759 MUC5BQ9HC84 5762 aaPredicted RBP2.44□□□□□ -2.02
SYNE3-204ENST00000555759 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
SYNE3-204ENST00000555759 KRTAP5-7Q6L8G8 165 aa2.37□□□□□ -2.03
SYNE3-204ENST00000555759 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
SYNE3-204ENST00000555759 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 57.8 ms