RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 SPRR2DP22532 72 aa5.03□□□□□ -1.6
SHMT2-211ENST00000554310 TNP1P09430 55 aa5.02□□□□□ -1.61
SHMT2-211ENST00000554310 KRTAP2-2Q9BYT5 123 aa5.02□□□□□ -1.61
SHMT2-211ENST00000554310 KRTAP2-1Q9BYU5 128 aa5.02□□□□□ -1.61
SHMT2-211ENST00000554310 PP632Q6XCG6 107 aa5.01□□□□□ -1.61
SHMT2-211ENST00000554310 KRTAP23-1A1A580 65 aa4.98□□□□□ -1.61
SHMT2-211ENST00000554310 KRTAP19-7Q3SYF9 63 aa4.9□□□□□ -1.63
SHMT2-211ENST00000554310 LCE3BQ5TA77 95 aa4.89□□□□□ -1.63
SHMT2-211ENST00000554310 MT1EP04732 61 aa4.87□□□□□ -1.63
SHMT2-211ENST00000554310 LCE5AQ5TCM9 118 aa4.82□□□□□ -1.64
SHMT2-211ENST00000554310 KRTAP19-3Q7Z4W3 81 aa4.82□□□□□ -1.64
SHMT2-211ENST00000554310 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
SHMT2-211ENST00000554310 KRTAP15-1Q3LI76 137 aa4.76□□□□□ -1.65
SHMT2-211ENST00000554310 LCE3AQ5TA76 89 aa4.75□□□□□ -1.65
SHMT2-211ENST00000554310 DSTQ03001 7570 aaKnown RBP4.74□□□□□ -1.65
SHMT2-211ENST00000554310 MT1GP13640 62 aa4.71□□□□□ -1.66
SHMT2-211ENST00000554310 GPR98Q8WXG9 6306 aa4.7□□□□□ -1.66
SHMT2-211ENST00000554310 MT1LQ93083 61 aa4.66□□□□□ -1.66
SHMT2-211ENST00000554310 MT1MQ8N339 61 aa4.63□□□□□ -1.67
SHMT2-211ENST00000554310 KRTAP4-9Q9BYQ8 210 aa4.59□□□□□ -1.67
SHMT2-211ENST00000554310 KRTAP12-3P60328 96 aa4.57□□□□□ -1.68
SHMT2-211ENST00000554310 SPRR5A0A1B0GTR4 108 aa4.53□□□□□ -1.68
SHMT2-211ENST00000554310 KRTAP4-3Q9BYR4 195 aa4.48□□□□□ -1.69
SHMT2-211ENST00000554310 LCE4AQ5TA78 99 aa4.46□□□□□ -1.7
SHMT2-211ENST00000554310 NDUFAF8A1L188 74 aa4.44□□□□□ -1.7
SHMT2-211ENST00000554310 LUZP6Q538Z0 58 aa4.43□□□□□ -1.7
SHMT2-211ENST00000554310 LCE1DQ5T752 114 aa4.42□□□□□ -1.7
SHMT2-211ENST00000554310 HMCN1Q96RW7 5635 aa4.41□□□□□ -1.7
SHMT2-211ENST00000554310 KRTAP5-4Q6L8H1 288 aa4.39□□□□□ -1.71
SHMT2-211ENST00000554310 KRTAP4-7Q9BYR0 210 aa4.39□□□□□ -1.71
SHMT2-211ENST00000554310 MT4P47944 62 aa4.37□□□□□ -1.71
SHMT2-211ENST00000554310 KRTAP19-4Q3LI73 84 aa4.33□□□□□ -1.72
SHMT2-211ENST00000554310 KRTAP5-10Q6L8G5 202 aa4.31□□□□□ -1.72
SHMT2-211ENST00000554310 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
SHMT2-211ENST00000554310 AHNAK2Q8IVF2 5795 aa4.26□□□□□ -1.73
SHMT2-211ENST00000554310 KRTAP5-5Q701N2 237 aaPredicted RBP4.25□□□□□ -1.73
SHMT2-211ENST00000554310 KRTAP4-6Q9BYQ5 205 aa4.25□□□□□ -1.73
SHMT2-211ENST00000554310 H3BS24 57 aa4.21□□□□□ -1.74
SHMT2-211ENST00000554310 KRTAP5-7Q6L8G8 165 aa4.18□□□□□ -1.74
SHMT2-211ENST00000554310 LOC100996750A0A140TA64 210 aa4.16□□□□□ -1.74
SHMT2-211ENST00000554310 KRTAP20-2Q3LI61 65 aa4.13□□□□□ -1.75
SHMT2-211ENST00000554310 KRTAP12-4P60329 112 aa4.12□□□□□ -1.75
SHMT2-211ENST00000554310 KRTAP5-3Q6L8H2 238 aa4.11□□□□□ -1.75
SHMT2-211ENST00000554310 SYNE1Q8NF91 8797 aaKnown RBP4.1□□□□□ -1.75
SHMT2-211ENST00000554310 KRTAP9-6A8MVA2 160 aa4.04□□□□□ -1.76
SHMT2-211ENST00000554310 A0A0A0MQY5 61 aa3.98□□□□□ -1.77
SHMT2-211ENST00000554310 MT1AP04731 61 aa3.98□□□□□ -1.77
SHMT2-211ENST00000554310 KRTAP6-1Q3LI64 71 aa3.92□□□□□ -1.78
SHMT2-211ENST00000554310 KRTAP5-2Q701N4 177 aa3.86□□□□□ -1.79
SHMT2-211ENST00000554310 KRTAP9-4Q9BYQ2 154 aa3.81□□□□□ -1.8
SHMT2-211ENST00000554310 KRTAP4-11Q9BYQ6 195 aa3.75□□□□□ -1.81
SHMT2-211ENST00000554310 KRTAP6-2Q3LI66 62 aa3.74□□□□□ -1.81
SHMT2-211ENST00000554310 INE1O15225 51 aa3.72□□□□□ -1.81
SHMT2-211ENST00000554310 MUC5ACP98088 5654 aa3.63□□□□□ -1.83
SHMT2-211ENST00000554310 MT3P25713 68 aa3.63□□□□□ -1.83
SHMT2-211ENST00000554310 AHNAKQ09666 5890 aaKnown RBP3.63□□□□□ -1.83
SHMT2-211ENST00000554310 KRTAP5-8O75690 187 aa3.62□□□□□ -1.83
SHMT2-211ENST00000554310 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
SHMT2-211ENST00000554310 MUC5BQ9HC84 5762 aaPredicted RBP3.57□□□□□ -1.84
SHMT2-211ENST00000554310 KRTAP9-9Q9BYP9 154 aa3.45□□□□□ -1.86
SHMT2-211ENST00000554310 KRTAP5-1Q6L8H4 278 aa3.43□□□□□ -1.86
SHMT2-211ENST00000554310 LCE1EQ5T753 118 aa3.34□□□□□ -1.87
SHMT2-211ENST00000554310 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
SHMT2-211ENST00000554310 LCE3EQ5T5B0 92 aa3.19□□□□□ -1.9
SHMT2-211ENST00000554310 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
SHMT2-211ENST00000554310 LCE1CQ5T751 118 aa3.09□□□□□ -1.91
SHMT2-211ENST00000554310 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
SHMT2-211ENST00000554310 PRM1P04553 51 aa2.85□□□□□ -1.95
SHMT2-211ENST00000554310 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.83□□□□□ -1.96
SHMT2-211ENST00000554310 KRTAP5-11Q6L8G4 156 aa2.8□□□□□ -1.96
SHMT2-211ENST00000554310 KRTAP4-12Q9BQ66 201 aa2.77□□□□□ -1.97
SHMT2-211ENST00000554310 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
SHMT2-211ENST00000554310 KRTAP21-2Q3LI59 83 aa2.59□□□□□ -1.99
SHMT2-211ENST00000554310 PHGR1C9JFL3 82 aa2.54□□□□□ -2
SHMT2-211ENST00000554310 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
SHMT2-211ENST00000554310 MUC19Q7Z5P9 8384 aa2.24□□□□□ -2.05
SHMT2-211ENST00000554310 KRTAP21-1Q3LI58 79 aa1.91□□□□□ -2.1
SHMT2-211ENST00000554310 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 89.9 ms