RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 KRTAP25-1Q3LHN0 102 aa4.13□□□□□ -1.75
TMEM116-216ENST00000552800 CAMK2N1Q7Z7J9 78 aa4.12□□□□□ -1.75
TMEM116-216ENST00000552800 NDUFAF8A1L188 74 aa4.06□□□□□ -1.76
TMEM116-216ENST00000552800 KRTAP10-5P60370 271 aa4.06□□□□□ -1.76
TMEM116-216ENST00000552800 MT1XP80297 61 aa4.06□□□□□ -1.76
TMEM116-216ENST00000552800 LCE1FQ5T754 118 aa4.04□□□□□ -1.76
TMEM116-216ENST00000552800 PP632Q6XCG6 107 aa4.04□□□□□ -1.76
TMEM116-216ENST00000552800 TNP1P09430 55 aa4.03□□□□□ -1.76
TMEM116-216ENST00000552800 PRO2289Q9P1D8 64 aa4□□□□□ -1.77
TMEM116-216ENST00000552800 KRTAP10-12P60413 245 aa3.94□□□□□ -1.78
TMEM116-216ENST00000552800 USH2AO75445 5202 aa3.94□□□□□ -1.78
TMEM116-216ENST00000552800 KRTAP19-6Q3LI70 58 aa3.93□□□□□ -1.78
TMEM116-216ENST00000552800 KRTAP8-1Q8IUC2 63 aa3.88□□□□□ -1.79
TMEM116-216ENST00000552800 KRTAP9-6A8MVA2 160 aa3.84□□□□□ -1.79
TMEM116-216ENST00000552800 OBSCNQ5VST9 7968 aa3.83□□□□□ -1.8
TMEM116-216ENST00000552800 SSPOA2VEC9 5147 aa3.83□□□□□ -1.8
TMEM116-216ENST00000552800 LCE3CQ5T5A8 94 aa3.8□□□□□ -1.8
TMEM116-216ENST00000552800 LCE3AQ5TA76 89 aa3.8□□□□□ -1.8
TMEM116-216ENST00000552800 KRTAP4-3Q9BYR4 195 aa3.8□□□□□ -1.8
TMEM116-216ENST00000552800 KRTAP5-2Q701N4 177 aa3.78□□□□□ -1.8
TMEM116-216ENST00000552800 KRTAP12-3P60328 96 aa3.7□□□□□ -1.82
TMEM116-216ENST00000552800 SPRR5A0A1B0GTR4 108 aa3.65□□□□□ -1.83
TMEM116-216ENST00000552800 KRTAP19-7Q3SYF9 63 aa3.65□□□□□ -1.83
TMEM116-216ENST00000552800 FCGBPQ9Y6R7 5405 aaPredicted RBP3.63□□□□□ -1.83
TMEM116-216ENST00000552800 KRTAP19-5Q3LI72 72 aa3.63□□□□□ -1.83
TMEM116-216ENST00000552800 CRCT1Q9UGL9 99 aa3.6□□□□□ -1.83
TMEM116-216ENST00000552800 FSIP2Q5CZC0 6907 aa3.58□□□□□ -1.84
TMEM116-216ENST00000552800 MT1EP04732 61 aa3.55□□□□□ -1.84
TMEM116-216ENST00000552800 KMT2DO14686 5537 aa3.55□□□□□ -1.84
TMEM116-216ENST00000552800 MT1LQ93083 61 aa3.49□□□□□ -1.85
TMEM116-216ENST00000552800 LCE3EQ5T5B0 92 aa3.47□□□□□ -1.85
TMEM116-216ENST00000552800 MT1GP13640 62 aa3.43□□□□□ -1.86
TMEM116-216ENST00000552800 KRTAP19-3Q7Z4W3 81 aa3.41□□□□□ -1.86
TMEM116-216ENST00000552800 LUZP6Q538Z0 58 aa3.38□□□□□ -1.87
TMEM116-216ENST00000552800 MACF1Q9UPN3 7388 aaKnown RBP3.36□□□□□ -1.87
TMEM116-216ENST00000552800 KRTAP6-3Q3LI67 103 aa3.35□□□□□ -1.87
TMEM116-216ENST00000552800 SPRR2FQ96RM1 72 aa3.34□□□□□ -1.87
TMEM116-216ENST00000552800 MT1MQ8N339 61 aa3.33□□□□□ -1.88
TMEM116-216ENST00000552800 MUC12Q9UKN1 5478 aa3.27□□□□□ -1.89
TMEM116-216ENST00000552800 SYNE2Q8WXH0 6885 aaKnown RBP3.21□□□□□ -1.9
TMEM116-216ENST00000552800 KRTAP5-8O75690 187 aa3.21□□□□□ -1.9
TMEM116-216ENST00000552800 SPRR2EP22531 72 aa3.16□□□□□ -1.9
TMEM116-216ENST00000552800 SPRR2BP35325 72 aa3.16□□□□□ -1.9
TMEM116-216ENST00000552800 SPRR2AP35326 72 aa3.16□□□□□ -1.9
TMEM116-216ENST00000552800 KRTAP2-3P0C7H8 128 aa3.15□□□□□ -1.91
TMEM116-216ENST00000552800 KRTAP2-4Q9BYR9 128 aa3.15□□□□□ -1.91
TMEM116-216ENST00000552800 KRTAP2-1Q9BYU5 128 aa3.15□□□□□ -1.91
TMEM116-216ENST00000552800 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
TMEM116-216ENST00000552800 KRTAP5-5Q701N2 237 aaPredicted RBP3.09□□□□□ -1.91
TMEM116-216ENST00000552800 SPRR2DP22532 72 aa3.04□□□□□ -1.92
TMEM116-216ENST00000552800 DSTQ03001 7570 aaKnown RBP2.99□□□□□ -1.93
TMEM116-216ENST00000552800 MT1AP04731 61 aa2.99□□□□□ -1.93
TMEM116-216ENST00000552800 NEBP20929 6669 aa2.98□□□□□ -1.93
TMEM116-216ENST00000552800 KRTAP6-1Q3LI64 71 aa2.91□□□□□ -1.94
TMEM116-216ENST00000552800 LCE1CQ5T751 118 aa2.9□□□□□ -1.95
TMEM116-216ENST00000552800 LCE1BQ5T7P3 118 aa2.9□□□□□ -1.95
TMEM116-216ENST00000552800 LCE3DQ9BYE3 92 aa2.87□□□□□ -1.95
TMEM116-216ENST00000552800 INE1O15225 51 aa2.86□□□□□ -1.95
TMEM116-216ENST00000552800 SYNE1Q8NF91 8797 aaKnown RBP2.82□□□□□ -1.96
TMEM116-216ENST00000552800 KRTAP12-4P60329 112 aa2.77□□□□□ -1.97
TMEM116-216ENST00000552800 KRTAP20-1Q3LI63 56 aa2.74□□□□□ -1.97
TMEM116-216ENST00000552800 KRTAP20-2Q3LI61 65 aa2.66□□□□□ -1.98
TMEM116-216ENST00000552800 KRTAP6-2Q3LI66 62 aa2.65□□□□□ -1.99
TMEM116-216ENST00000552800 MT4P47944 62 aa2.58□□□□□ -2
TMEM116-216ENST00000552800 HMCN1Q96RW7 5635 aa2.53□□□□□ -2
TMEM116-216ENST00000552800 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
TMEM116-216ENST00000552800 KRTAP5-7Q6L8G8 165 aa2.35□□□□□ -2.03
TMEM116-216ENST00000552800 KRTAP5-10Q6L8G5 202 aa2.28□□□□□ -2.04
TMEM116-216ENST00000552800 AHNAK2Q8IVF2 5795 aa2.2□□□□□ -2.06
TMEM116-216ENST00000552800 PRM1P04553 51 aa2.18□□□□□ -2.06
TMEM116-216ENST00000552800 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
TMEM116-216ENST00000552800 MUC5ACP98088 5654 aa2.09□□□□□ -2.07
TMEM116-216ENST00000552800 GPR98Q8WXG9 6306 aa1.85□□□□□ -2.11
TMEM116-216ENST00000552800 MUC5BQ9HC84 5762 aaPredicted RBP1.83□□□□□ -2.12
TMEM116-216ENST00000552800 PHGR1C9JFL3 82 aa1.68□□□□□ -2.14
TMEM116-216ENST00000552800 AHNAKQ09666 5890 aaKnown RBP1.6□□□□□ -2.15
TMEM116-216ENST00000552800 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
TMEM116-216ENST00000552800 MUC16Q8WXI7 14507 aa1.06□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 134 ms