RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
LIMA1-213ENST00000552720 USH2AO75445 5202 aa2.95□□□□□ -1.94
LIMA1-213ENST00000552720 KRTAP10-7P60409 375 aaPredicted RBP2.95□□□□□ -1.94
LIMA1-213ENST00000552720 KRTAP10-12P60413 245 aa2.93□□□□□ -1.94
LIMA1-213ENST00000552720 KMT2DO14686 5537 aa2.91□□□□□ -1.94
LIMA1-213ENST00000552720 KRTAP12-3P60328 96 aa2.91□□□□□ -1.94
LIMA1-213ENST00000552720 LCE1AQ5T7P2 110 aa2.85□□□□□ -1.95
LIMA1-213ENST00000552720 INE1O15225 51 aa2.84□□□□□ -1.95
LIMA1-213ENST00000552720 LCE1FQ5T754 118 aa2.82□□□□□ -1.96
LIMA1-213ENST00000552720 KRTAP19-5Q3LI72 72 aa2.81□□□□□ -1.96
LIMA1-213ENST00000552720 LCE3CQ5T5A8 94 aa2.74□□□□□ -1.97
LIMA1-213ENST00000552720 FSIP2Q5CZC0 6907 aa2.72□□□□□ -1.97
LIMA1-213ENST00000552720 KRTAP9-6A8MVA2 160 aa2.7□□□□□ -1.98
LIMA1-213ENST00000552720 SSPOA2VEC9 5147 aa2.69□□□□□ -1.98
LIMA1-213ENST00000552720 KRTAP19-7Q3SYF9 63 aa2.68□□□□□ -1.98
LIMA1-213ENST00000552720 MT3P25713 68 aa2.65□□□□□ -1.99
LIMA1-213ENST00000552720 KRTAP2-2Q9BYT5 123 aa2.61□□□□□ -1.99
LIMA1-213ENST00000552720 MT1LQ93083 61 aa2.59□□□□□ -2
LIMA1-213ENST00000552720 MT1EP04732 61 aa2.58□□□□□ -2
LIMA1-213ENST00000552720 FCGBPQ9Y6R7 5405 aaPredicted RBP2.56□□□□□ -2
LIMA1-213ENST00000552720 MUC12Q9UKN1 5478 aa2.56□□□□□ -2
LIMA1-213ENST00000552720 KRTAP2-3P0C7H8 128 aa2.54□□□□□ -2
LIMA1-213ENST00000552720 KRTAP2-4Q9BYR9 128 aa2.54□□□□□ -2
LIMA1-213ENST00000552720 KRTAP2-1Q9BYU5 128 aa2.54□□□□□ -2
LIMA1-213ENST00000552720 KRTAP4-3Q9BYR4 195 aa2.51□□□□□ -2.01
LIMA1-213ENST00000552720 KRTAP19-6Q3LI70 58 aa2.5□□□□□ -2.01
LIMA1-213ENST00000552720 HMCN1Q96RW7 5635 aa2.49□□□□□ -2.01
LIMA1-213ENST00000552720 DSTQ03001 7570 aaKnown RBP2.49□□□□□ -2.01
LIMA1-213ENST00000552720 LCE3EQ5T5B0 92 aa2.46□□□□□ -2.02
LIMA1-213ENST00000552720 MT1GP13640 62 aa2.46□□□□□ -2.02
LIMA1-213ENST00000552720 CRCT1Q9UGL9 99 aa2.43□□□□□ -2.02
LIMA1-213ENST00000552720 MT1MQ8N339 61 aa2.42□□□□□ -2.02
LIMA1-213ENST00000552720 KRTAP19-3Q7Z4W3 81 aa2.4□□□□□ -2.03
LIMA1-213ENST00000552720 MACF1Q9UPN3 7388 aaKnown RBP2.38□□□□□ -2.03
LIMA1-213ENST00000552720 KRTAP5-11Q6L8G4 156 aa2.37□□□□□ -2.03
LIMA1-213ENST00000552720 SYNE1Q8NF91 8797 aaKnown RBP2.36□□□□□ -2.03
LIMA1-213ENST00000552720 SYNE2Q8WXH0 6885 aaKnown RBP2.36□□□□□ -2.03
LIMA1-213ENST00000552720 SPRR2FQ96RM1 72 aa2.33□□□□□ -2.04
LIMA1-213ENST00000552720 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
LIMA1-213ENST00000552720 MDN1Q9NU22 5596 aa2.28□□□□□ -2.04
LIMA1-213ENST00000552720 KRTAP12-4P60329 112 aa2.28□□□□□ -2.04
LIMA1-213ENST00000552720 LCE1EQ5T753 118 aa2.27□□□□□ -2.05
LIMA1-213ENST00000552720 KRTAP6-1Q3LI64 71 aa2.23□□□□□ -2.05
LIMA1-213ENST00000552720 LCE3DQ9BYE3 92 aa2.2□□□□□ -2.06
LIMA1-213ENST00000552720 OBSCNQ5VST9 7968 aa2.16□□□□□ -2.06
LIMA1-213ENST00000552720 MT1AP04731 61 aa2.15□□□□□ -2.07
LIMA1-213ENST00000552720 GPR98Q8WXG9 6306 aa2.13□□□□□ -2.07
LIMA1-213ENST00000552720 KRTAP5-5Q701N2 237 aaPredicted RBP2.12□□□□□ -2.07
LIMA1-213ENST00000552720 KRTAP5-9P26371 169 aa2.11□□□□□ -2.07
LIMA1-213ENST00000552720 SPRR2EP22531 72 aa2.1□□□□□ -2.07
LIMA1-213ENST00000552720 SPRR2BP35325 72 aa2.1□□□□□ -2.07
LIMA1-213ENST00000552720 SPRR2AP35326 72 aa2.1□□□□□ -2.07
LIMA1-213ENST00000552720 KRTAP6-3Q3LI67 103 aa2.08□□□□□ -2.08
LIMA1-213ENST00000552720 PRM1P04553 51 aa2.03□□□□□ -2.08
LIMA1-213ENST00000552720 KRTAP5-1Q6L8H4 278 aa2.03□□□□□ -2.08
LIMA1-213ENST00000552720 NEBP20929 6669 aa2.03□□□□□ -2.08
LIMA1-213ENST00000552720 SPRR2DP22532 72 aa2□□□□□ -2.09
LIMA1-213ENST00000552720 KRTAP6-2Q3LI66 62 aa1.99□□□□□ -2.09
LIMA1-213ENST00000552720 MUC5BQ9HC84 5762 aaPredicted RBP1.96□□□□□ -2.1
LIMA1-213ENST00000552720 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
LIMA1-213ENST00000552720 KRTAP5-4Q6L8H1 288 aa1.93□□□□□ -2.1
LIMA1-213ENST00000552720 KRTAP20-1Q3LI63 56 aa1.92□□□□□ -2.1
LIMA1-213ENST00000552720 MT4P47944 62 aa1.81□□□□□ -2.12
LIMA1-213ENST00000552720 KRTAP20-2Q3LI61 65 aa1.75□□□□□ -2.13
LIMA1-213ENST00000552720 KRTAP5-2Q701N4 177 aa1.72□□□□□ -2.13
LIMA1-213ENST00000552720 MUC5ACP98088 5654 aa1.71□□□□□ -2.14
LIMA1-213ENST00000552720 AHNAK2Q8IVF2 5795 aa1.71□□□□□ -2.14
LIMA1-213ENST00000552720 AHNAKQ09666 5890 aaKnown RBP1.7□□□□□ -2.14
LIMA1-213ENST00000552720 KRTAP5-7Q6L8G8 165 aa1.63□□□□□ -2.15
LIMA1-213ENST00000552720 LCE1BQ5T7P3 118 aa1.6□□□□□ -2.15
LIMA1-213ENST00000552720 KRTAP5-10Q6L8G5 202 aa1.56□□□□□ -2.16
LIMA1-213ENST00000552720 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
LIMA1-213ENST00000552720 LCE1CQ5T751 118 aa1.47□□□□□ -2.17
LIMA1-213ENST00000552720 KRTAP21-2Q3LI59 83 aa1.42□□□□□ -2.18
LIMA1-213ENST00000552720 KRTAP5-8O75690 187 aa1.38□□□□□ -2.19
LIMA1-213ENST00000552720 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
LIMA1-213ENST00000552720 PHGR1C9JFL3 82 aa1.1□□□□□ -2.23
LIMA1-213ENST00000552720 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 110.9 ms