RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SPRR2GQ9BYE4 73 aa2.26□□□□□ -2.05
LIMA1-212ENST00000552491 OBSCNQ5VST9 7968 aa2.24□□□□□ -2.05
LIMA1-212ENST00000552491 LCE3AQ5TA76 89 aa2.23□□□□□ -2.05
LIMA1-212ENST00000552491 MT1FP04733 61 aa2.21□□□□□ -2.06
LIMA1-212ENST00000552491 KRTAP4-3Q9BYR4 195 aa2.21□□□□□ -2.06
LIMA1-212ENST00000552491 MT1HP80294 61 aa2.2□□□□□ -2.06
LIMA1-212ENST00000552491 KRTAP5-5Q701N2 237 aaPredicted RBP2.2□□□□□ -2.06
LIMA1-212ENST00000552491 MT2AP02795 61 aa2.19□□□□□ -2.06
LIMA1-212ENST00000552491 M0R2T5 61 aa2.19□□□□□ -2.06
LIMA1-212ENST00000552491 KRTAP10-10P60014 251 aa2.17□□□□□ -2.06
LIMA1-212ENST00000552491 KRTAP8-1Q8IUC2 63 aa2.17□□□□□ -2.06
LIMA1-212ENST00000552491 KRTAP10-5P60370 271 aa2.15□□□□□ -2.07
LIMA1-212ENST00000552491 KRTAP19-8Q3LI54 63 aa2.15□□□□□ -2.07
LIMA1-212ENST00000552491 MT1BP07438 61 aa2.14□□□□□ -2.07
LIMA1-212ENST00000552491 MT1XP80297 61 aa2.14□□□□□ -2.07
LIMA1-212ENST00000552491 KRTAP9-6A8MVA2 160 aa2.13□□□□□ -2.07
LIMA1-212ENST00000552491 KRTAP5-8O75690 187 aa2.13□□□□□ -2.07
LIMA1-212ENST00000552491 KRTAP12-3P60328 96 aa2.11□□□□□ -2.07
LIMA1-212ENST00000552491 PRO2289Q9P1D8 64 aa2.11□□□□□ -2.07
LIMA1-212ENST00000552491 KRTAP10-12P60413 245 aa2.1□□□□□ -2.07
LIMA1-212ENST00000552491 INE1O15225 51 aa2.09□□□□□ -2.07
LIMA1-212ENST00000552491 KMT2DO14686 5537 aa2.08□□□□□ -2.08
LIMA1-212ENST00000552491 USH2AO75445 5202 aa2.06□□□□□ -2.08
LIMA1-212ENST00000552491 KRTAP5-2Q701N4 177 aa2.02□□□□□ -2.09
LIMA1-212ENST00000552491 KRTAP19-5Q3LI72 72 aa2.02□□□□□ -2.09
LIMA1-212ENST00000552491 CRCT1Q9UGL9 99 aa2.01□□□□□ -2.09
LIMA1-212ENST00000552491 FSIP2Q5CZC0 6907 aa1.99□□□□□ -2.09
LIMA1-212ENST00000552491 LCE3CQ5T5A8 94 aa1.99□□□□□ -2.09
LIMA1-212ENST00000552491 MT3P25713 68 aa1.98□□□□□ -2.09
LIMA1-212ENST00000552491 AHNAKQ09666 5890 aaKnown RBP1.98□□□□□ -2.09
LIMA1-212ENST00000552491 KRTAP19-7Q3SYF9 63 aa1.92□□□□□ -2.1
LIMA1-212ENST00000552491 KRTAP2-3P0C7H8 128 aa1.89□□□□□ -2.11
LIMA1-212ENST00000552491 KRTAP2-4Q9BYR9 128 aa1.89□□□□□ -2.11
LIMA1-212ENST00000552491 KRTAP2-1Q9BYU5 128 aa1.89□□□□□ -2.11
LIMA1-212ENST00000552491 LCE1FQ5T754 118 aa1.87□□□□□ -2.11
LIMA1-212ENST00000552491 SSPOA2VEC9 5147 aa1.86□□□□□ -2.11
LIMA1-212ENST00000552491 MT1LQ93083 61 aa1.85□□□□□ -2.11
LIMA1-212ENST00000552491 MT1EP04732 61 aa1.84□□□□□ -2.11
LIMA1-212ENST00000552491 KRTAP19-6Q3LI70 58 aa1.84□□□□□ -2.11
LIMA1-212ENST00000552491 FCGBPQ9Y6R7 5405 aaPredicted RBP1.83□□□□□ -2.12
LIMA1-212ENST00000552491 NEBP20929 6669 aa1.82□□□□□ -2.12
LIMA1-212ENST00000552491 MACF1Q9UPN3 7388 aaKnown RBP1.8□□□□□ -2.12
LIMA1-212ENST00000552491 SYNE2Q8WXH0 6885 aaKnown RBP1.79□□□□□ -2.12
LIMA1-212ENST00000552491 MUC12Q9UKN1 5478 aa1.79□□□□□ -2.12
LIMA1-212ENST00000552491 KRTAP20-1Q3LI63 56 aa1.77□□□□□ -2.13
LIMA1-212ENST00000552491 AHNAK2Q8IVF2 5795 aa1.76□□□□□ -2.13
LIMA1-212ENST00000552491 DSTQ03001 7570 aaKnown RBP1.75□□□□□ -2.13
LIMA1-212ENST00000552491 MT1GP13640 62 aa1.75□□□□□ -2.13
LIMA1-212ENST00000552491 KRTAP6-3Q3LI67 103 aa1.73□□□□□ -2.13
LIMA1-212ENST00000552491 MT1MQ8N339 61 aa1.72□□□□□ -2.13
LIMA1-212ENST00000552491 KRTAP19-3Q7Z4W3 81 aa1.69□□□□□ -2.14
LIMA1-212ENST00000552491 KRTAP12-4P60329 112 aa1.68□□□□□ -2.14
LIMA1-212ENST00000552491 LCE3EQ5T5B0 92 aa1.68□□□□□ -2.14
LIMA1-212ENST00000552491 SYNE1Q8NF91 8797 aaKnown RBP1.66□□□□□ -2.14
LIMA1-212ENST00000552491 KRTAP5-7Q6L8G8 165 aa1.66□□□□□ -2.14
LIMA1-212ENST00000552491 SPRR2FQ96RM1 72 aa1.63□□□□□ -2.15
LIMA1-212ENST00000552491 MDN1Q9NU22 5596 aa1.61□□□□□ -2.15
LIMA1-212ENST00000552491 MT1AP04731 61 aa1.6□□□□□ -2.15
LIMA1-212ENST00000552491 SPRR2EP22531 72 aa1.6□□□□□ -2.15
LIMA1-212ENST00000552491 SPRR2BP35325 72 aa1.6□□□□□ -2.15
LIMA1-212ENST00000552491 SPRR2AP35326 72 aa1.6□□□□□ -2.15
LIMA1-212ENST00000552491 KRTAP6-1Q3LI64 71 aa1.59□□□□□ -2.16
LIMA1-212ENST00000552491 LCE1CQ5T751 118 aa1.57□□□□□ -2.16
LIMA1-212ENST00000552491 LCE1BQ5T7P3 118 aa1.57□□□□□ -2.16
LIMA1-212ENST00000552491 SPRR2DP22532 72 aa1.54□□□□□ -2.16
LIMA1-212ENST00000552491 LCE3DQ9BYE3 92 aa1.54□□□□□ -2.16
LIMA1-212ENST00000552491 PRM1P04553 51 aa1.51□□□□□ -2.17
LIMA1-212ENST00000552491 MUC5ACP98088 5654 aa1.48□□□□□ -2.17
LIMA1-212ENST00000552491 MUC19Q7Z5P9 8384 aa1.45□□□□□ -2.18
LIMA1-212ENST00000552491 KRTAP6-2Q3LI66 62 aa1.45□□□□□ -2.18
LIMA1-212ENST00000552491 KRTAP5-10Q6L8G5 202 aa1.43□□□□□ -2.18
LIMA1-212ENST00000552491 MT4P47944 62 aa1.34□□□□□ -2.2
LIMA1-212ENST00000552491 KRTAP20-2Q3LI61 65 aa1.26□□□□□ -2.21
LIMA1-212ENST00000552491 KRTAP21-2Q3LI59 83 aa1.17□□□□□ -2.22
LIMA1-212ENST00000552491 KRTAP21-1Q3LI58 79 aa0.95□□□□□ -2.26
LIMA1-212ENST00000552491 PHGR1C9JFL3 82 aa0.85□□□□□ -2.27
LIMA1-212ENST00000552491 MUC16Q8WXI7 14507 aa0.56□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 32.9 ms