RNA–Protein interactions for RNA: ENST00000550557.1

NR4A1-215, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 1 (best)

Gene NR4A1, Length 4,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-215ENST00000550557 MUC2Q02817 5179 aa4.26□□□□□ -1.73
NR4A1-215ENST00000550557 KRTAP19-3Q7Z4W3 81 aa4.19□□□□□ -1.74
NR4A1-215ENST00000550557 LCE3BQ5TA77 95 aa4.15□□□□□ -1.75
NR4A1-215ENST00000550557 KRTAP9-7A8MTY7 169 aa4.11□□□□□ -1.75
NR4A1-215ENST00000550557 SYNE1Q8NF91 8797 aaKnown RBP4.1□□□□□ -1.75
NR4A1-215ENST00000550557 MT1EP04732 61 aa4.07□□□□□ -1.76
NR4A1-215ENST00000550557 MT1LQ93083 61 aa4.05□□□□□ -1.76
NR4A1-215ENST00000550557 SYNE2Q8WXH0 6885 aaKnown RBP4.01□□□□□ -1.77
NR4A1-215ENST00000550557 MT4P47944 62 aa4.01□□□□□ -1.77
NR4A1-215ENST00000550557 KRTAP20-1Q3LI63 56 aa3.99□□□□□ -1.77
NR4A1-215ENST00000550557 MT1MQ8N339 61 aa3.96□□□□□ -1.78
NR4A1-215ENST00000550557 KRTAP4-7Q9BYR0 210 aa3.96□□□□□ -1.78
NR4A1-215ENST00000550557 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.95□□□□□ -1.78
NR4A1-215ENST00000550557 KRTAP6-3Q3LI67 103 aa3.95□□□□□ -1.78
NR4A1-215ENST00000550557 KRTAP19-7Q3SYF9 63 aa3.92□□□□□ -1.78
NR4A1-215ENST00000550557 LCE3DQ9BYE3 92 aa3.87□□□□□ -1.79
NR4A1-215ENST00000550557 LCE3EQ5T5B0 92 aa3.84□□□□□ -1.79
NR4A1-215ENST00000550557 KRTAP2-3P0C7H8 128 aa3.83□□□□□ -1.8
NR4A1-215ENST00000550557 KRTAP2-4Q9BYR9 128 aa3.83□□□□□ -1.8
NR4A1-215ENST00000550557 MT3P25713 68 aa3.81□□□□□ -1.8
NR4A1-215ENST00000550557 LCE1AQ5T7P2 110 aa3.8□□□□□ -1.8
NR4A1-215ENST00000550557 KRTAP4-3Q9BYR4 195 aa3.8□□□□□ -1.8
NR4A1-215ENST00000550557 KRTAP2-1Q9BYU5 128 aa3.74□□□□□ -1.81
NR4A1-215ENST00000550557 LOC100996750A0A140TA64 210 aa3.72□□□□□ -1.81
NR4A1-215ENST00000550557 USH2AO75445 5202 aa3.72□□□□□ -1.81
NR4A1-215ENST00000550557 KRTAP2-2Q9BYT5 123 aa3.71□□□□□ -1.82
NR4A1-215ENST00000550557 KRTAP9-6A8MVA2 160 aa3.69□□□□□ -1.82
NR4A1-215ENST00000550557 LCE1DQ5T752 114 aa3.64□□□□□ -1.83
NR4A1-215ENST00000550557 MT1AP04731 61 aa3.63□□□□□ -1.83
NR4A1-215ENST00000550557 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
NR4A1-215ENST00000550557 KRTAP4-9Q9BYQ8 210 aa3.6□□□□□ -1.83
NR4A1-215ENST00000550557 OBSCNQ5VST9 7968 aa3.59□□□□□ -1.83
NR4A1-215ENST00000550557 LCE4AQ5TA78 99 aa3.58□□□□□ -1.84
NR4A1-215ENST00000550557 KMT2DO14686 5537 aa3.57□□□□□ -1.84
NR4A1-215ENST00000550557 LCE5AQ5TCM9 118 aa3.56□□□□□ -1.84
NR4A1-215ENST00000550557 MACF1Q9UPN3 7388 aaKnown RBP3.55□□□□□ -1.84
NR4A1-215ENST00000550557 DSTQ03001 7570 aaKnown RBP3.5□□□□□ -1.85
NR4A1-215ENST00000550557 PRM1P04553 51 aa3.48□□□□□ -1.85
NR4A1-215ENST00000550557 NEBP20929 6669 aa3.44□□□□□ -1.86
NR4A1-215ENST00000550557 SSPOA2VEC9 5147 aa3.44□□□□□ -1.86
NR4A1-215ENST00000550557 FCGBPQ9Y6R7 5405 aaPredicted RBP3.43□□□□□ -1.86
NR4A1-215ENST00000550557 KRTAP6-1Q3LI64 71 aa3.39□□□□□ -1.87
NR4A1-215ENST00000550557 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
NR4A1-215ENST00000550557 KRTAP5-9P26371 169 aa3.35□□□□□ -1.87
NR4A1-215ENST00000550557 KRTAP9-4Q9BYQ2 154 aa3.35□□□□□ -1.87
NR4A1-215ENST00000550557 MDN1Q9NU22 5596 aa3.34□□□□□ -1.88
NR4A1-215ENST00000550557 GPR98Q8WXG9 6306 aa3.31□□□□□ -1.88
NR4A1-215ENST00000550557 MUC12Q9UKN1 5478 aa3.3□□□□□ -1.88
NR4A1-215ENST00000550557 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
NR4A1-215ENST00000550557 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
NR4A1-215ENST00000550557 LCE1EQ5T753 118 aa3.11□□□□□ -1.91
NR4A1-215ENST00000550557 LCE1FQ5T754 118 aa3.11□□□□□ -1.91
NR4A1-215ENST00000550557 KRTAP4-6Q9BYQ5 205 aa3.08□□□□□ -1.92
NR4A1-215ENST00000550557 MUC19Q7Z5P9 8384 aa3.08□□□□□ -1.92
NR4A1-215ENST00000550557 KRTAP20-2Q3LI61 65 aa3.02□□□□□ -1.93
NR4A1-215ENST00000550557 KRTAP5-5Q701N2 237 aaPredicted RBP2.91□□□□□ -1.94
NR4A1-215ENST00000550557 KRTAP5-4Q6L8H1 288 aa2.84□□□□□ -1.95
NR4A1-215ENST00000550557 KRTAP4-11Q9BYQ6 195 aa2.78□□□□□ -1.96
NR4A1-215ENST00000550557 KRTAP5-3Q6L8H2 238 aa2.67□□□□□ -1.98
NR4A1-215ENST00000550557 AHNAK2Q8IVF2 5795 aa2.66□□□□□ -1.98
NR4A1-215ENST00000550557 KRTAP4-12Q9BQ66 201 aa2.62□□□□□ -1.99
NR4A1-215ENST00000550557 KRTAP4-2Q9BYR5 136 aa2.62□□□□□ -1.99
NR4A1-215ENST00000550557 MUC5ACP98088 5654 aa2.59□□□□□ -1.99
NR4A1-215ENST00000550557 HMCN1Q96RW7 5635 aa2.54□□□□□ -2
NR4A1-215ENST00000550557 KRTAP4-4Q9BYR3 166 aa2.5□□□□□ -2.01
NR4A1-215ENST00000550557 KRTAP5-2Q701N4 177 aa2.42□□□□□ -2.02
NR4A1-215ENST00000550557 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
NR4A1-215ENST00000550557 AHNAKQ09666 5890 aaKnown RBP2.19□□□□□ -2.06
NR4A1-215ENST00000550557 KRTAP5-10Q6L8G5 202 aa2.19□□□□□ -2.06
NR4A1-215ENST00000550557 PHGR1C9JFL3 82 aa2.1□□□□□ -2.07
NR4A1-215ENST00000550557 KRTAP5-1Q6L8H4 278 aa2.08□□□□□ -2.08
NR4A1-215ENST00000550557 MUC5BQ9HC84 5762 aaPredicted RBP2.07□□□□□ -2.08
NR4A1-215ENST00000550557 KRTAP5-7Q6L8G8 165 aa1.97□□□□□ -2.09
NR4A1-215ENST00000550557 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
NR4A1-215ENST00000550557 KRTAP5-11Q6L8G4 156 aa1.96□□□□□ -2.1
NR4A1-215ENST00000550557 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.95□□□□□ -2.1
NR4A1-215ENST00000550557 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
NR4A1-215ENST00000550557 MUC16Q8WXI7 14507 aa1.21□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 55.5 ms