RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 SPRR2BP35325 72 aa5.02□□□□□ -1.61
CUX1-214ENST00000550008 SPRR2AP35326 72 aa5.02□□□□□ -1.61
CUX1-214ENST00000550008 FCGBPQ9Y6R7 5405 aaPredicted RBP5□□□□□ -1.61
CUX1-214ENST00000550008 KRTAP4-3Q9BYR4 195 aa4.99□□□□□ -1.61
CUX1-214ENST00000550008 KRTAP19-4Q3LI73 84 aa4.97□□□□□ -1.61
CUX1-214ENST00000550008 KRTAP19-7Q3SYF9 63 aa4.96□□□□□ -1.62
CUX1-214ENST00000550008 KRTAP19-3Q7Z4W3 81 aa4.95□□□□□ -1.62
CUX1-214ENST00000550008 LOC100996750A0A140TA64 210 aa4.93□□□□□ -1.62
CUX1-214ENST00000550008 KRTAP19-6Q3LI70 58 aa4.93□□□□□ -1.62
CUX1-214ENST00000550008 KRTAP12-4P60329 112 aa4.89□□□□□ -1.63
CUX1-214ENST00000550008 MT1MQ8N339 61 aa4.83□□□□□ -1.64
CUX1-214ENST00000550008 SPRR2DP22532 72 aa4.81□□□□□ -1.64
CUX1-214ENST00000550008 KRTAP9-2Q9BYQ4 174 aa4.81□□□□□ -1.64
CUX1-214ENST00000550008 SYNE2Q8WXH0 6885 aaKnown RBP4.81□□□□□ -1.64
CUX1-214ENST00000550008 KRTAP9-6A8MVA2 160 aa4.74□□□□□ -1.65
CUX1-214ENST00000550008 MUC12Q9UKN1 5478 aa4.7□□□□□ -1.66
CUX1-214ENST00000550008 SSPOA2VEC9 5147 aa4.64□□□□□ -1.67
CUX1-214ENST00000550008 LCE2DQ5TA82 110 aaPredicted RBP4.63□□□□□ -1.67
CUX1-214ENST00000550008 LCE3DQ9BYE3 92 aa4.61□□□□□ -1.67
CUX1-214ENST00000550008 KRTAP4-9Q9BYQ8 210 aa4.55□□□□□ -1.68
CUX1-214ENST00000550008 LCE3EQ5T5B0 92 aa4.51□□□□□ -1.69
CUX1-214ENST00000550008 MACF1Q9UPN3 7388 aaKnown RBP4.5□□□□□ -1.69
CUX1-214ENST00000550008 KRTAP2-3P0C7H8 128 aa4.47□□□□□ -1.69
CUX1-214ENST00000550008 KRTAP2-4Q9BYR9 128 aa4.47□□□□□ -1.69
CUX1-214ENST00000550008 KRTAP2-1Q9BYU5 128 aa4.47□□□□□ -1.69
CUX1-214ENST00000550008 MT4P47944 62 aa4.42□□□□□ -1.7
CUX1-214ENST00000550008 LCE5AQ5TCM9 118 aa4.4□□□□□ -1.71
CUX1-214ENST00000550008 MT1AP04731 61 aa4.34□□□□□ -1.72
CUX1-214ENST00000550008 KRTAP6-1Q3LI64 71 aa4.34□□□□□ -1.72
CUX1-214ENST00000550008 KRTAP9-6A0A140TA67 174 aa4.33□□□□□ -1.72
CUX1-214ENST00000550008 LCE1AQ5T7P2 110 aa4.33□□□□□ -1.72
CUX1-214ENST00000550008 PRM1P04553 51 aa4.32□□□□□ -1.72
CUX1-214ENST00000550008 MT3P25713 68 aa4.29□□□□□ -1.72
CUX1-214ENST00000550008 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.21□□□□□ -1.74
CUX1-214ENST00000550008 KRTAP9-7A8MTY7 169 aa4.14□□□□□ -1.75
CUX1-214ENST00000550008 KRTAP6-2Q3LI66 62 aa4.13□□□□□ -1.75
CUX1-214ENST00000550008 KRTAP6-3Q3LI67 103 aa4.12□□□□□ -1.75
CUX1-214ENST00000550008 MDN1Q9NU22 5596 aa4.1□□□□□ -1.75
CUX1-214ENST00000550008 LCE1DQ5T752 114 aa4.09□□□□□ -1.75
CUX1-214ENST00000550008 LCE1BQ5T7P3 118 aa4.06□□□□□ -1.76
CUX1-214ENST00000550008 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
CUX1-214ENST00000550008 MUC19Q7Z5P9 8384 aa3.92□□□□□ -1.78
CUX1-214ENST00000550008 KRTAP5-9P26371 169 aa3.92□□□□□ -1.78
CUX1-214ENST00000550008 KRTAP20-1Q3LI63 56 aa3.84□□□□□ -1.79
CUX1-214ENST00000550008 NEBP20929 6669 aa3.76□□□□□ -1.81
CUX1-214ENST00000550008 KRTAP2-2Q9BYT5 123 aa3.76□□□□□ -1.81
CUX1-214ENST00000550008 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
CUX1-214ENST00000550008 LCE4AQ5TA78 99 aa3.73□□□□□ -1.81
CUX1-214ENST00000550008 KRTAP20-2Q3LI61 65 aa3.52□□□□□ -1.85
CUX1-214ENST00000550008 KRTAP5-5Q701N2 237 aaPredicted RBP3.5□□□□□ -1.85
CUX1-214ENST00000550008 MUC5ACP98088 5654 aa3.38□□□□□ -1.87
CUX1-214ENST00000550008 LCE1EQ5T753 118 aa3.29□□□□□ -1.88
CUX1-214ENST00000550008 GPR98Q8WXG9 6306 aa3.26□□□□□ -1.89
CUX1-214ENST00000550008 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
CUX1-214ENST00000550008 HMCN1Q96RW7 5635 aa3.23□□□□□ -1.89
CUX1-214ENST00000550008 LCE1CQ5T751 118 aa3.19□□□□□ -1.9
CUX1-214ENST00000550008 LCE1FQ5T754 118 aa3.19□□□□□ -1.9
CUX1-214ENST00000550008 KRTAP5-4Q6L8H1 288 aa3.17□□□□□ -1.9
CUX1-214ENST00000550008 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
CUX1-214ENST00000550008 KRTAP4-12Q9BQ66 201 aa3.06□□□□□ -1.92
CUX1-214ENST00000550008 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
CUX1-214ENST00000550008 KRTAP9-9Q9BYP9 154 aa3.05□□□□□ -1.92
CUX1-214ENST00000550008 AHNAK2Q8IVF2 5795 aa2.89□□□□□ -1.95
CUX1-214ENST00000550008 KRTAP5-3Q6L8H2 238 aa2.89□□□□□ -1.95
CUX1-214ENST00000550008 KRTAP5-2Q701N4 177 aa2.86□□□□□ -1.95
CUX1-214ENST00000550008 KRTAP5-8O75690 187 aa2.73□□□□□ -1.97
CUX1-214ENST00000550008 KRTAP5-10Q6L8G5 202 aa2.7□□□□□ -1.98
CUX1-214ENST00000550008 MUC5BQ9HC84 5762 aaPredicted RBP2.61□□□□□ -1.99
CUX1-214ENST00000550008 KRTAP5-1Q6L8H4 278 aa2.57□□□□□ -2
CUX1-214ENST00000550008 AHNAKQ09666 5890 aaKnown RBP2.44□□□□□ -2.02
CUX1-214ENST00000550008 KRTAP21-2Q3LI59 83 aa2.43□□□□□ -2.02
CUX1-214ENST00000550008 KRTAP5-11Q6L8G4 156 aa2.33□□□□□ -2.04
CUX1-214ENST00000550008 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.19□□□□□ -2.06
CUX1-214ENST00000550008 KRTAP21-1Q3LI58 79 aa2.07□□□□□ -2.08
CUX1-214ENST00000550008 KRTAP5-7Q6L8G8 165 aa2.03□□□□□ -2.08
CUX1-214ENST00000550008 PHGR1C9JFL3 82 aa2.01□□□□□ -2.09
CUX1-214ENST00000550008 MUC16Q8WXI7 14507 aa1.38□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 72.3 ms