RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-213ENST00000548421 SPRR2EP22531 72 aa10.29□□□□□ -0.76
BRF1-213ENST00000548421 SPRR2BP35325 72 aa10.29□□□□□ -0.76
BRF1-213ENST00000548421 SPRR2AP35326 72 aa10.29□□□□□ -0.76
BRF1-213ENST00000548421 LCE1AQ5T7P2 110 aa10.29□□□□□ -0.76
BRF1-213ENST00000548421 KRTAP15-1Q3LI76 137 aa10.28□□□□□ -0.76
BRF1-213ENST00000548421 MT1LQ93083 61 aa10.28□□□□□ -0.76
BRF1-213ENST00000548421 KRTAP19-3Q7Z4W3 81 aa10.26□□□□□ -0.77
BRF1-213ENST00000548421 SVIPQ8NHG7 77 aa10.17□□□□□ -0.78
BRF1-213ENST00000548421 KRTAP2-3P0C7H8 128 aa10.13□□□□□ -0.79
BRF1-213ENST00000548421 MT1GP13640 62 aa10.13□□□□□ -0.79
BRF1-213ENST00000548421 LCE5AQ5TCM9 118 aa10.13□□□□□ -0.79
BRF1-213ENST00000548421 KRTAP2-4Q9BYR9 128 aa10.13□□□□□ -0.79
BRF1-213ENST00000548421 KRTAP19-4Q3LI73 84 aa10.04□□□□□ -0.8
BRF1-213ENST00000548421 MT1MQ8N339 61 aa9.98□□□□□ -0.81
BRF1-213ENST00000548421 SPRR2DP22532 72 aa9.92□□□□□ -0.82
BRF1-213ENST00000548421 LCE3CQ5T5A8 94 aa9.88□□□□□ -0.83
BRF1-213ENST00000548421 KRTAP4-7Q9BYR0 210 aa9.85□□□□□ -0.83
BRF1-213ENST00000548421 KRTAP2-2Q9BYT5 123 aa9.81□□□□□ -0.84
BRF1-213ENST00000548421 KRTAP2-1Q9BYU5 128 aa9.81□□□□□ -0.84
BRF1-213ENST00000548421 KRTAP4-3Q9BYR4 195 aa9.72□□□□□ -0.85
BRF1-213ENST00000548421 LCE3BQ5TA77 95 aa9.61□□□□□ -0.87
BRF1-213ENST00000548421 DSTQ03001 7570 aaKnown RBP9.58□□□□□ -0.88
BRF1-213ENST00000548421 SPRR5A0A1B0GTR4 108 aa9.38□□□□□ -0.91
BRF1-213ENST00000548421 KRTAP9-6A8MVA2 160 aa9.3□□□□□ -0.92
BRF1-213ENST00000548421 LOC100996750A0A140TA64 210 aa9.28□□□□□ -0.92
BRF1-213ENST00000548421 KRTAP5-5Q701N2 237 aaPredicted RBP9.05□□□□□ -0.96
BRF1-213ENST00000548421 KRTAP4-9Q9BYQ8 210 aa8.96□□□□□ -0.97
BRF1-213ENST00000548421 KRTAP5-4Q6L8H1 288 aa8.87□□□□□ -0.99
BRF1-213ENST00000548421 LUZP6Q538Z0 58 aa8.84□□□□□ -0.99
BRF1-213ENST00000548421 LCE4AQ5TA78 99 aa8.83□□□□□ -1
BRF1-213ENST00000548421 GPR98Q8WXG9 6306 aa8.78□□□□□ -1
BRF1-213ENST00000548421 MT1AP04731 61 aa8.76□□□□□ -1.01
BRF1-213ENST00000548421 LCE1DQ5T752 114 aa8.74□□□□□ -1.01
BRF1-213ENST00000548421 MT4P47944 62 aa8.65□□□□□ -1.02
BRF1-213ENST00000548421 KRTAP6-1Q3LI64 71 aa8.65□□□□□ -1.02
BRF1-213ENST00000548421 SYNE1Q8NF91 8797 aaKnown RBP8.61□□□□□ -1.03
BRF1-213ENST00000548421 HMCN1Q96RW7 5635 aa8.58□□□□□ -1.04
BRF1-213ENST00000548421 KRTAP12-4P60329 112 aa8.54□□□□□ -1.04
BRF1-213ENST00000548421 KRTAP4-6Q9BYQ5 205 aa8.48□□□□□ -1.05
BRF1-213ENST00000548421 KRTAP9-4Q9BYQ2 154 aa8.34□□□□□ -1.07
BRF1-213ENST00000548421 KRTAP20-2Q3LI61 65 aa8.31□□□□□ -1.08
BRF1-213ENST00000548421 AHNAK2Q8IVF2 5795 aa8.27□□□□□ -1.09
BRF1-213ENST00000548421 NDUFAF8A1L188 74 aa8.24□□□□□ -1.09
BRF1-213ENST00000548421 KRTAP5-10Q6L8G5 202 aa8.15□□□□□ -1.1
BRF1-213ENST00000548421 KRTAP6-2Q3LI66 62 aa8.06□□□□□ -1.12
BRF1-213ENST00000548421 KRTAP5-3Q6L8H2 238 aa8.01□□□□□ -1.13
BRF1-213ENST00000548421 KRTAP5-2Q701N4 177 aa7.97□□□□□ -1.13
BRF1-213ENST00000548421 MT3P25713 68 aa7.96□□□□□ -1.13
BRF1-213ENST00000548421 KRTAP5-7Q6L8G8 165 aa7.84□□□□□ -1.15
BRF1-213ENST00000548421 KRTAP4-11Q9BYQ6 195 aa7.38□□□□□ -1.23
BRF1-213ENST00000548421 LCE3DQ9BYE3 92 aa7.34□□□□□ -1.23
BRF1-213ENST00000548421 OBSCNQ5VST9 7968 aa7.31□□□□□ -1.24
BRF1-213ENST00000548421 A0A0A0MQY5 61 aa7.13□□□□□ -1.27
BRF1-213ENST00000548421 KRTAP5-8O75690 187 aa7.11□□□□□ -1.27
BRF1-213ENST00000548421 LCE3EQ5T5B0 92 aa7.09□□□□□ -1.27
BRF1-213ENST00000548421 LCE1EQ5T753 118 aa7.04□□□□□ -1.28
BRF1-213ENST00000548421 KRTAP5-1Q6L8H4 278 aa6.94□□□□□ -1.3
BRF1-213ENST00000548421 MUC5BQ9HC84 5762 aaPredicted RBP6.83□□□□□ -1.32
BRF1-213ENST00000548421 MUC5ACP98088 5654 aa6.82□□□□□ -1.32
BRF1-213ENST00000548421 INE1O15225 51 aa6.81□□□□□ -1.32
BRF1-213ENST00000548421 KRTAP9-9Q9BYP9 154 aa6.8□□□□□ -1.32
BRF1-213ENST00000548421 AHNAKQ09666 5890 aaKnown RBP6.79□□□□□ -1.32
BRF1-213ENST00000548421 H3BS24 57 aa6.67□□□□□ -1.34
BRF1-213ENST00000548421 LCE1BQ5T7P3 118 aa6.56□□□□□ -1.36
BRF1-213ENST00000548421 KRTAP4-2Q9BYR5 136 aa6.55□□□□□ -1.36
BRF1-213ENST00000548421 LCE1CQ5T751 118 aa6.54□□□□□ -1.36
BRF1-213ENST00000548421 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.09□□□□□ -1.44
BRF1-213ENST00000548421 PRM1P04553 51 aa5.95□□□□□ -1.46
BRF1-213ENST00000548421 KRTAP5-11Q6L8G4 156 aa5.83□□□□□ -1.48
BRF1-213ENST00000548421 KRTAP21-2Q3LI59 83 aa5.68□□□□□ -1.5
BRF1-213ENST00000548421 KRTAP4-12Q9BQ66 201 aa5.55□□□□□ -1.52
BRF1-213ENST00000548421 LCE1FQ5T754 118 aa5.39□□□□□ -1.55
BRF1-213ENST00000548421 KRTAP4-4Q9BYR3 166 aa5.05□□□□□ -1.6
BRF1-213ENST00000548421 PHGR1C9JFL3 82 aa5□□□□□ -1.61
BRF1-213ENST00000548421 MUC19Q7Z5P9 8384 aa4.43□□□□□ -1.7
BRF1-213ENST00000548421 KRTAP21-1Q3LI58 79 aa3.62□□□□□ -1.83
BRF1-213ENST00000548421 MUC16Q8WXI7 14507 aa3.18□□□□□ -1.9
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms