RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 USH2AO75445 5202 aa2.32□□□□□ -2.04
LIMA1-203ENST00000547825 LCE3AQ5TA76 89 aa2.3□□□□□ -2.04
LIMA1-203ENST00000547825 PRO2289Q9P1D8 64 aa2.29□□□□□ -2.04
LIMA1-203ENST00000547825 MT2AP02795 61 aa2.28□□□□□ -2.04
LIMA1-203ENST00000547825 KMT2DO14686 5537 aa2.27□□□□□ -2.05
LIMA1-203ENST00000547825 MT1FP04733 61 aa2.27□□□□□ -2.05
LIMA1-203ENST00000547825 INE1O15225 51 aa2.24□□□□□ -2.05
LIMA1-203ENST00000547825 KRTAP12-3P60328 96 aa2.24□□□□□ -2.05
LIMA1-203ENST00000547825 CRCT1Q9UGL9 99 aa2.24□□□□□ -2.05
LIMA1-203ENST00000547825 KRTAP19-6Q3LI70 58 aa2.21□□□□□ -2.06
LIMA1-203ENST00000547825 FCGBPQ9Y6R7 5405 aaPredicted RBP2.21□□□□□ -2.06
LIMA1-203ENST00000547825 KRTAP10-7P60409 375 aaPredicted RBP2.19□□□□□ -2.06
LIMA1-203ENST00000547825 SPRR5A0A1B0GTR4 108 aa2.18□□□□□ -2.06
LIMA1-203ENST00000547825 KRTAP19-8Q3LI54 63 aa2.16□□□□□ -2.06
LIMA1-203ENST00000547825 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.06
LIMA1-203ENST00000547825 SPRR2GQ9BYE4 73 aa2.15□□□□□ -2.06
LIMA1-203ENST00000547825 LCE1EQ5T753 118 aa2.15□□□□□ -2.07
LIMA1-203ENST00000547825 OBSCNQ5VST9 7968 aa2.14□□□□□ -2.07
LIMA1-203ENST00000547825 MT1BP07438 61 aa2.14□□□□□ -2.07
LIMA1-203ENST00000547825 SYNE1Q8NF91 8797 aaKnown RBP2.12□□□□□ -2.07
LIMA1-203ENST00000547825 KRTAP9-6A8MVA2 160 aa2.11□□□□□ -2.07
LIMA1-203ENST00000547825 FSIP2Q5CZC0 6907 aa2.09□□□□□ -2.08
LIMA1-203ENST00000547825 MACF1Q9UPN3 7388 aaKnown RBP2.09□□□□□ -2.08
LIMA1-203ENST00000547825 KRTAP5-11Q6L8G4 156 aa2.07□□□□□ -2.08
LIMA1-203ENST00000547825 GPR98Q8WXG9 6306 aa2.06□□□□□ -2.08
LIMA1-203ENST00000547825 KRTAP5-9P26371 169 aa2.06□□□□□ -2.08
LIMA1-203ENST00000547825 KRTAP8-1Q8IUC2 63 aa2.06□□□□□ -2.08
LIMA1-203ENST00000547825 MT1XP80297 61 aa2.04□□□□□ -2.08
LIMA1-203ENST00000547825 KRTAP19-5Q3LI72 72 aa2.04□□□□□ -2.08
LIMA1-203ENST00000547825 KRTAP6-3Q3LI67 103 aa2.04□□□□□ -2.08
LIMA1-203ENST00000547825 SYNE2Q8WXH0 6885 aaKnown RBP2□□□□□ -2.09
LIMA1-203ENST00000547825 MUC12Q9UKN1 5478 aa1.98□□□□□ -2.09
LIMA1-203ENST00000547825 NEBP20929 6669 aa1.96□□□□□ -2.1
LIMA1-203ENST00000547825 DSTQ03001 7570 aaKnown RBP1.92□□□□□ -2.1
LIMA1-203ENST00000547825 MDN1Q9NU22 5596 aa1.91□□□□□ -2.1
LIMA1-203ENST00000547825 KRTAP12-4P60329 112 aa1.89□□□□□ -2.11
LIMA1-203ENST00000547825 MT1GP13640 62 aa1.86□□□□□ -2.11
LIMA1-203ENST00000547825 KRTAP19-7Q3SYF9 63 aa1.84□□□□□ -2.12
LIMA1-203ENST00000547825 SPRR2FQ96RM1 72 aa1.81□□□□□ -2.12
LIMA1-203ENST00000547825 KRTAP2-3P0C7H8 128 aa1.8□□□□□ -2.12
LIMA1-203ENST00000547825 KRTAP2-4Q9BYR9 128 aa1.8□□□□□ -2.12
LIMA1-203ENST00000547825 KRTAP2-1Q9BYU5 128 aa1.8□□□□□ -2.12
LIMA1-203ENST00000547825 AHNAKQ09666 5890 aaKnown RBP1.79□□□□□ -2.12
LIMA1-203ENST00000547825 KRTAP4-3Q9BYR4 195 aa1.79□□□□□ -2.12
LIMA1-203ENST00000547825 KRTAP20-1Q3LI63 56 aa1.76□□□□□ -2.13
LIMA1-203ENST00000547825 MT1EP04732 61 aa1.76□□□□□ -2.13
LIMA1-203ENST00000547825 KRTAP5-5Q701N2 237 aaPredicted RBP1.75□□□□□ -2.13
LIMA1-203ENST00000547825 KRTAP4-4Q9BYR3 166 aa1.75□□□□□ -2.13
LIMA1-203ENST00000547825 MT1LQ93083 61 aa1.75□□□□□ -2.13
LIMA1-203ENST00000547825 KRTAP5-1Q6L8H4 278 aa1.73□□□□□ -2.13
LIMA1-203ENST00000547825 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.72□□□□□ -2.13
LIMA1-203ENST00000547825 SPRR2EP22531 72 aa1.72□□□□□ -2.13
LIMA1-203ENST00000547825 SPRR2BP35325 72 aa1.72□□□□□ -2.13
LIMA1-203ENST00000547825 SPRR2AP35326 72 aa1.72□□□□□ -2.13
LIMA1-203ENST00000547825 KRTAP5-4Q6L8H1 288 aa1.7□□□□□ -2.14
LIMA1-203ENST00000547825 KRTAP19-3Q7Z4W3 81 aa1.7□□□□□ -2.14
LIMA1-203ENST00000547825 PRM1P04553 51 aa1.67□□□□□ -2.14
LIMA1-203ENST00000547825 SPRR2DP22532 72 aa1.66□□□□□ -2.14
LIMA1-203ENST00000547825 MT1MQ8N339 61 aa1.65□□□□□ -2.15
LIMA1-203ENST00000547825 AHNAK2Q8IVF2 5795 aa1.59□□□□□ -2.15
LIMA1-203ENST00000547825 MUC19Q7Z5P9 8384 aa1.59□□□□□ -2.16
LIMA1-203ENST00000547825 KRTAP5-10Q6L8G5 202 aa1.54□□□□□ -2.16
LIMA1-203ENST00000547825 MT1AP04731 61 aa1.53□□□□□ -2.16
LIMA1-203ENST00000547825 KRTAP6-1Q3LI64 71 aa1.53□□□□□ -2.16
LIMA1-203ENST00000547825 KRTAP5-2Q701N4 177 aa1.52□□□□□ -2.17
LIMA1-203ENST00000547825 KRTAP20-2Q3LI61 65 aa1.49□□□□□ -2.17
LIMA1-203ENST00000547825 KRTAP6-2Q3LI66 62 aa1.49□□□□□ -2.17
LIMA1-203ENST00000547825 KRTAP5-7Q6L8G8 165 aa1.47□□□□□ -2.17
LIMA1-203ENST00000547825 LCE1CQ5T751 118 aa1.47□□□□□ -2.17
LIMA1-203ENST00000547825 LCE1BQ5T7P3 118 aa1.47□□□□□ -2.17
LIMA1-203ENST00000547825 MT4P47944 62 aa1.44□□□□□ -2.18
LIMA1-203ENST00000547825 MUC5ACP98088 5654 aa1.38□□□□□ -2.19
LIMA1-203ENST00000547825 KRTAP5-8O75690 187 aa1.36□□□□□ -2.19
LIMA1-203ENST00000547825 KRTAP21-2Q3LI59 83 aa1.07□□□□□ -2.24
LIMA1-203ENST00000547825 KRTAP21-1Q3LI58 79 aa0.94□□□□□ -2.26
LIMA1-203ENST00000547825 PHGR1C9JFL3 82 aa0.91□□□□□ -2.26
LIMA1-203ENST00000547825 MUC16Q8WXI7 14507 aa0.83□□□□□ -2.28
Retrieved 77 of 20,778 RNA–protein pairs in 98 ms