RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 KRTAP9-2Q9BYQ4 174 aa4.13□□□□□ -1.75
PTCH1-212ENST00000546744 MT1EP04732 61 aa4.06□□□□□ -1.76
PTCH1-212ENST00000546744 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
PTCH1-212ENST00000546744 SYNE1Q8NF91 8797 aaKnown RBP4.05□□□□□ -1.76
PTCH1-212ENST00000546744 KRTAP2-3P0C7H8 128 aa4.05□□□□□ -1.76
PTCH1-212ENST00000546744 KRTAP2-4Q9BYR9 128 aa4.05□□□□□ -1.76
PTCH1-212ENST00000546744 KRTAP2-1Q9BYU5 128 aa4.05□□□□□ -1.76
PTCH1-212ENST00000546744 SSPOA2VEC9 5147 aa3.99□□□□□ -1.77
PTCH1-212ENST00000546744 SPRR2EP22531 72 aa3.98□□□□□ -1.77
PTCH1-212ENST00000546744 SPRR2BP35325 72 aa3.98□□□□□ -1.77
PTCH1-212ENST00000546744 SPRR2AP35326 72 aa3.98□□□□□ -1.77
PTCH1-212ENST00000546744 KRTAP9-6A0A140TA67 174 aa3.95□□□□□ -1.78
PTCH1-212ENST00000546744 PRM1P04553 51 aa3.93□□□□□ -1.78
PTCH1-212ENST00000546744 KRTAP19-7Q3SYF9 63 aa3.91□□□□□ -1.78
PTCH1-212ENST00000546744 KMT2DO14686 5537 aa3.9□□□□□ -1.79
PTCH1-212ENST00000546744 MT3P25713 68 aa3.88□□□□□ -1.79
PTCH1-212ENST00000546744 MT1MQ8N339 61 aa3.88□□□□□ -1.79
PTCH1-212ENST00000546744 KRTAP4-7Q9BYR0 210 aa3.87□□□□□ -1.79
PTCH1-212ENST00000546744 FCGBPQ9Y6R7 5405 aaPredicted RBP3.85□□□□□ -1.79
PTCH1-212ENST00000546744 SPRR2DP22532 72 aa3.84□□□□□ -1.8
PTCH1-212ENST00000546744 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
PTCH1-212ENST00000546744 SYNE2Q8WXH0 6885 aaKnown RBP3.78□□□□□ -1.8
PTCH1-212ENST00000546744 MT1AP04731 61 aa3.78□□□□□ -1.8
PTCH1-212ENST00000546744 MACF1Q9UPN3 7388 aaKnown RBP3.7□□□□□ -1.82
PTCH1-212ENST00000546744 KRTAP9-7A8MTY7 169 aa3.7□□□□□ -1.82
PTCH1-212ENST00000546744 KRTAP4-3Q9BYR4 195 aa3.67□□□□□ -1.82
PTCH1-212ENST00000546744 MUC12Q9UKN1 5478 aa3.65□□□□□ -1.83
PTCH1-212ENST00000546744 DSTQ03001 7570 aaKnown RBP3.64□□□□□ -1.83
PTCH1-212ENST00000546744 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.62□□□□□ -1.83
PTCH1-212ENST00000546744 LOC100996750A0A140TA64 210 aa3.61□□□□□ -1.83
PTCH1-212ENST00000546744 KRTAP9-6A8MVA2 160 aa3.59□□□□□ -1.83
PTCH1-212ENST00000546744 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.84
PTCH1-212ENST00000546744 KRTAP6-3Q3LI67 103 aa3.57□□□□□ -1.84
PTCH1-212ENST00000546744 LCE1AQ5T7P2 110 aa3.55□□□□□ -1.84
PTCH1-212ENST00000546744 KRTAP2-2Q9BYT5 123 aa3.54□□□□□ -1.84
PTCH1-212ENST00000546744 KRTAP5-9P26371 169 aa3.51□□□□□ -1.85
PTCH1-212ENST00000546744 MT4P47944 62 aa3.49□□□□□ -1.85
PTCH1-212ENST00000546744 KRTAP6-2Q3LI66 62 aa3.46□□□□□ -1.86
PTCH1-212ENST00000546744 KRTAP20-1Q3LI63 56 aa3.45□□□□□ -1.86
PTCH1-212ENST00000546744 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
PTCH1-212ENST00000546744 KRTAP4-9Q9BYQ8 210 aa3.42□□□□□ -1.86
PTCH1-212ENST00000546744 MDN1Q9NU22 5596 aa3.38□□□□□ -1.87
PTCH1-212ENST00000546744 KRTAP9-4Q9BYQ2 154 aa3.37□□□□□ -1.87
PTCH1-212ENST00000546744 KRTAP6-1Q3LI64 71 aa3.36□□□□□ -1.87
PTCH1-212ENST00000546744 LCE1DQ5T752 114 aa3.34□□□□□ -1.87
PTCH1-212ENST00000546744 LCE1BQ5T7P3 118 aa3.33□□□□□ -1.88
PTCH1-212ENST00000546744 LCE1FQ5T754 118 aa3.32□□□□□ -1.88
PTCH1-212ENST00000546744 NEBP20929 6669 aa3.22□□□□□ -1.89
PTCH1-212ENST00000546744 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
PTCH1-212ENST00000546744 LCE4AQ5TA78 99 aa3.12□□□□□ -1.91
PTCH1-212ENST00000546744 KRTAP5-5Q701N2 237 aaPredicted RBP3.06□□□□□ -1.92
PTCH1-212ENST00000546744 KRTAP4-6Q9BYQ5 205 aa2.96□□□□□ -1.94
PTCH1-212ENST00000546744 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
PTCH1-212ENST00000546744 KRTAP20-2Q3LI61 65 aa2.89□□□□□ -1.95
PTCH1-212ENST00000546744 MUC19Q7Z5P9 8384 aa2.81□□□□□ -1.96
PTCH1-212ENST00000546744 KRTAP4-11Q9BYQ6 195 aa2.79□□□□□ -1.96
PTCH1-212ENST00000546744 KRTAP9-9Q9BYP9 154 aa2.77□□□□□ -1.97
PTCH1-212ENST00000546744 HMCN1Q96RW7 5635 aa2.74□□□□□ -1.97
PTCH1-212ENST00000546744 LCE1CQ5T751 118 aa2.71□□□□□ -1.98
PTCH1-212ENST00000546744 KRTAP5-2Q701N4 177 aa2.61□□□□□ -1.99
PTCH1-212ENST00000546744 KRTAP5-3Q6L8H2 238 aa2.6□□□□□ -1.99
PTCH1-212ENST00000546744 MUC5ACP98088 5654 aa2.54□□□□□ -2
PTCH1-212ENST00000546744 KRTAP4-12Q9BQ66 201 aa2.43□□□□□ -2.02
PTCH1-212ENST00000546744 AHNAK2Q8IVF2 5795 aa2.43□□□□□ -2.02
PTCH1-212ENST00000546744 KRTAP4-2Q9BYR5 136 aa2.34□□□□□ -2.03
PTCH1-212ENST00000546744 KRTAP5-8O75690 187 aa2.28□□□□□ -2.05
PTCH1-212ENST00000546744 KRTAP5-1Q6L8H4 278 aa2.28□□□□□ -2.05
PTCH1-212ENST00000546744 KRTAP5-10Q6L8G5 202 aa2.23□□□□□ -2.05
PTCH1-212ENST00000546744 KRTAP4-4Q9BYR3 166 aa2.23□□□□□ -2.05
PTCH1-212ENST00000546744 KRTAP5-7Q6L8G8 165 aa2.08□□□□□ -2.08
PTCH1-212ENST00000546744 AHNAKQ09666 5890 aaKnown RBP2.06□□□□□ -2.08
PTCH1-212ENST00000546744 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.03□□□□□ -2.08
PTCH1-212ENST00000546744 MUC5BQ9HC84 5762 aaPredicted RBP2.02□□□□□ -2.09
PTCH1-212ENST00000546744 KRTAP21-2Q3LI59 83 aa2.01□□□□□ -2.09
PTCH1-212ENST00000546744 KRTAP5-11Q6L8G4 156 aa2.01□□□□□ -2.09
PTCH1-212ENST00000546744 KRTAP21-1Q3LI58 79 aa1.95□□□□□ -2.1
PTCH1-212ENST00000546744 PHGR1C9JFL3 82 aa1.83□□□□□ -2.12
PTCH1-212ENST00000546744 MUC16Q8WXI7 14507 aa1.09□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 11.1 ms