RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 LCE5AQ5TCM9 118 aa7.42□□□□□ -1.22
HMGA2-211ENST00000545998 KRTAP2-4Q9BYR9 128 aa7.42□□□□□ -1.22
HMGA2-211ENST00000545998 LOC100996750A0A140TA64 210 aa7.38□□□□□ -1.23
HMGA2-211ENST00000545998 KRTAP4-6Q9BYQ5 205 aa7.38□□□□□ -1.23
HMGA2-211ENST00000545998 ROMO1P60602 79 aa7.37□□□□□ -1.23
HMGA2-211ENST00000545998 KRTAP12-3P60328 96 aa7.33□□□□□ -1.24
HMGA2-211ENST00000545998 MT1LQ93083 61 aa7.33□□□□□ -1.24
HMGA2-211ENST00000545998 KRTAP23-1A1A580 65 aa7.3□□□□□ -1.24
HMGA2-211ENST00000545998 MT1GP13640 62 aa7.29□□□□□ -1.24
HMGA2-211ENST00000545998 LCE3BQ5TA77 95 aa7.25□□□□□ -1.25
HMGA2-211ENST00000545998 PP632Q6XCG6 107 aa7.22□□□□□ -1.25
HMGA2-211ENST00000545998 BRK1Q8WUW1 75 aa7.21□□□□□ -1.25
HMGA2-211ENST00000545998 KRTAP2-2Q9BYT5 123 aa7.21□□□□□ -1.25
HMGA2-211ENST00000545998 KRTAP2-1Q9BYU5 128 aa7.21□□□□□ -1.25
HMGA2-211ENST00000545998 MT1MQ8N339 61 aa7.19□□□□□ -1.26
HMGA2-211ENST00000545998 DSTQ03001 7570 aaKnown RBP7.18□□□□□ -1.26
HMGA2-211ENST00000545998 KRTAP4-3Q9BYR4 195 aa7.01□□□□□ -1.29
HMGA2-211ENST00000545998 KRTAP15-1Q3LI76 137 aa6.99□□□□□ -1.29
HMGA2-211ENST00000545998 KRTAP4-7Q9BYR0 210 aa6.99□□□□□ -1.29
HMGA2-211ENST00000545998 KRTAP19-4Q3LI73 84 aa6.93□□□□□ -1.3
HMGA2-211ENST00000545998 PMAIP1Q13794 54 aa6.8□□□□□ -1.32
HMGA2-211ENST00000545998 LCE3CQ5T5A8 94 aa6.79□□□□□ -1.32
HMGA2-211ENST00000545998 PRO0628Q9UI54 55 aa6.66□□□□□ -1.34
HMGA2-211ENST00000545998 LCE4AQ5TA78 99 aa6.65□□□□□ -1.35
HMGA2-211ENST00000545998 KRTAP4-9Q9BYQ8 210 aa6.63□□□□□ -1.35
HMGA2-211ENST00000545998 KRTAP5-4Q6L8H1 288 aa6.62□□□□□ -1.35
HMGA2-211ENST00000545998 KRTAP5-5Q701N2 237 aaPredicted RBP6.57□□□□□ -1.36
HMGA2-211ENST00000545998 LCE1DQ5T752 114 aa6.54□□□□□ -1.36
HMGA2-211ENST00000545998 HMCN1Q96RW7 5635 aa6.52□□□□□ -1.36
HMGA2-211ENST00000545998 MT4P47944 62 aa6.51□□□□□ -1.37
HMGA2-211ENST00000545998 PRAC1Q96KF2 57 aa6.47□□□□□ -1.37
HMGA2-211ENST00000545998 KRTAP9-6A8MVA2 160 aa6.42□□□□□ -1.38
HMGA2-211ENST00000545998 KTN1-AS1Q86SY8 53 aa6.27□□□□□ -1.41
HMGA2-211ENST00000545998 KRTAP12-4P60329 112 aa6.27□□□□□ -1.41
HMGA2-211ENST00000545998 SYNE1Q8NF91 8797 aaKnown RBP6.25□□□□□ -1.41
HMGA2-211ENST00000545998 SPRR5A0A1B0GTR4 108 aa6.23□□□□□ -1.41
HMGA2-211ENST00000545998 MT1AP04731 61 aa6.23□□□□□ -1.41
HMGA2-211ENST00000545998 KRTAP20-2Q3LI61 65 aa6.22□□□□□ -1.41
HMGA2-211ENST00000545998 KRTAP4-12Q9BQ66 201 aa6.21□□□□□ -1.42
HMGA2-211ENST00000545998 KRTAP9-9Q9BYP9 154 aa6.19□□□□□ -1.42
HMGA2-211ENST00000545998 KRTAP9-4Q9BYQ2 154 aa6.19□□□□□ -1.42
HMGA2-211ENST00000545998 KRTAP6-1Q3LI64 71 aa6.18□□□□□ -1.42
HMGA2-211ENST00000545998 GPR98Q8WXG9 6306 aa6.13□□□□□ -1.43
HMGA2-211ENST00000545998 AHNAK2Q8IVF2 5795 aa6.13□□□□□ -1.43
HMGA2-211ENST00000545998 KRTAP5-3Q6L8H2 238 aa6.03□□□□□ -1.44
HMGA2-211ENST00000545998 KRTAP5-2Q701N4 177 aa5.89□□□□□ -1.47
HMGA2-211ENST00000545998 KRTAP5-10Q6L8G5 202 aa5.87□□□□□ -1.47
HMGA2-211ENST00000545998 KRTAP6-2Q3LI66 62 aa5.82□□□□□ -1.48
HMGA2-211ENST00000545998 KRTAP4-2Q9BYR5 136 aa5.72□□□□□ -1.49
HMGA2-211ENST00000545998 MT3P25713 68 aa5.67□□□□□ -1.5
HMGA2-211ENST00000545998 KRTAP5-7Q6L8G8 165 aa5.58□□□□□ -1.52
HMGA2-211ENST00000545998 KRTAP4-11Q9BYQ6 195 aa5.57□□□□□ -1.52
HMGA2-211ENST00000545998 OBSCNQ5VST9 7968 aa5.44□□□□□ -1.54
HMGA2-211ENST00000545998 KRTAP5-8O75690 187 aa5.38□□□□□ -1.55
HMGA2-211ENST00000545998 LUZP6Q538Z0 58 aa5.38□□□□□ -1.55
HMGA2-211ENST00000545998 H3BS24 57 aa5.34□□□□□ -1.55
HMGA2-211ENST00000545998 KRTAP5-1Q6L8H4 278 aa5.2□□□□□ -1.58
HMGA2-211ENST00000545998 MUC5ACP98088 5654 aa5.15□□□□□ -1.59
HMGA2-211ENST00000545998 LCE1EQ5T753 118 aa5.12□□□□□ -1.59
HMGA2-211ENST00000545998 MUC5BQ9HC84 5762 aaPredicted RBP5.01□□□□□ -1.61
HMGA2-211ENST00000545998 LCE3DQ9BYE3 92 aa4.97□□□□□ -1.61
HMGA2-211ENST00000545998 AHNAKQ09666 5890 aaKnown RBP4.9□□□□□ -1.63
HMGA2-211ENST00000545998 LCE1BQ5T7P3 118 aa4.77□□□□□ -1.65
HMGA2-211ENST00000545998 LCE1CQ5T751 118 aa4.76□□□□□ -1.65
HMGA2-211ENST00000545998 LCE3EQ5T5B0 92 aa4.74□□□□□ -1.65
HMGA2-211ENST00000545998 A0A0A0MQY5 61 aa4.73□□□□□ -1.65
HMGA2-211ENST00000545998 NDUFAF8A1L188 74 aa4.71□□□□□ -1.66
HMGA2-211ENST00000545998 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
HMGA2-211ENST00000545998 KRTAP5-11Q6L8G4 156 aa4.27□□□□□ -1.73
HMGA2-211ENST00000545998 KRTAP21-2Q3LI59 83 aa4.07□□□□□ -1.76
HMGA2-211ENST00000545998 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
HMGA2-211ENST00000545998 INE1O15225 51 aa3.88□□□□□ -1.79
HMGA2-211ENST00000545998 PRM1P04553 51 aa3.8□□□□□ -1.8
HMGA2-211ENST00000545998 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
HMGA2-211ENST00000545998 KRTAP4-4Q9BYR3 166 aa3.64□□□□□ -1.83
HMGA2-211ENST00000545998 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
HMGA2-211ENST00000545998 KRTAP21-1Q3LI58 79 aa2.56□□□□□ -2
HMGA2-211ENST00000545998 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 169.6 ms