RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 LCE3DQ9BYE3 92 aa1.87□□□□□ -2.11
VPS50-220ENST00000544910 LCE3BQ5TA77 95 aa1.87□□□□□ -2.11
VPS50-220ENST00000544910 SPRR2EP22531 72 aa1.86□□□□□ -2.11
VPS50-220ENST00000544910 SPRR2BP35325 72 aa1.86□□□□□ -2.11
VPS50-220ENST00000544910 SPRR2AP35326 72 aa1.86□□□□□ -2.11
VPS50-220ENST00000544910 LCE3EQ5T5B0 92 aa1.86□□□□□ -2.11
VPS50-220ENST00000544910 MT1MQ8N339 61 aa1.86□□□□□ -2.11
VPS50-220ENST00000544910 KRTAP2-3P0C7H8 128 aa1.84□□□□□ -2.12
VPS50-220ENST00000544910 KRTAP2-4Q9BYR9 128 aa1.84□□□□□ -2.12
VPS50-220ENST00000544910 KRTAP2-1Q9BYU5 128 aa1.84□□□□□ -2.12
VPS50-220ENST00000544910 KRTAP4-3Q9BYR4 195 aa1.82□□□□□ -2.12
VPS50-220ENST00000544910 KRTAP9-6A8MVA2 160 aa1.81□□□□□ -2.12
VPS50-220ENST00000544910 SPRR2DP22532 72 aa1.8□□□□□ -2.12
VPS50-220ENST00000544910 KRTAP9-2Q9BYQ4 174 aa1.79□□□□□ -2.12
VPS50-220ENST00000544910 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.76□□□□□ -2.13
VPS50-220ENST00000544910 KRTAP9-9Q9BYP9 154 aa1.75□□□□□ -2.13
VPS50-220ENST00000544910 KRTAP9-4Q9BYQ2 154 aa1.75□□□□□ -2.13
VPS50-220ENST00000544910 PRM1P04553 51 aa1.74□□□□□ -2.13
VPS50-220ENST00000544910 KRTAP9-6A0A140TA67 174 aa1.73□□□□□ -2.13
VPS50-220ENST00000544910 USH2AO75445 5202 aa1.71□□□□□ -2.14
VPS50-220ENST00000544910 LCE5AQ5TCM9 118 aa1.7□□□□□ -2.14
VPS50-220ENST00000544910 MT1AP04731 61 aa1.7□□□□□ -2.14
VPS50-220ENST00000544910 KRTAP4-12Q9BQ66 201 aa1.69□□□□□ -2.14
VPS50-220ENST00000544910 KRTAP6-3Q3LI67 103 aa1.67□□□□□ -2.14
VPS50-220ENST00000544910 KMT2DO14686 5537 aa1.67□□□□□ -2.14
VPS50-220ENST00000544910 MT3P25713 68 aa1.66□□□□□ -2.14
VPS50-220ENST00000544910 LCE1AQ5T7P2 110 aa1.66□□□□□ -2.14
VPS50-220ENST00000544910 KRTAP6-1Q3LI64 71 aa1.65□□□□□ -2.15
VPS50-220ENST00000544910 KRTAP4-9Q9BYQ8 210 aa1.65□□□□□ -2.15
VPS50-220ENST00000544910 SSPOA2VEC9 5147 aa1.64□□□□□ -2.15
VPS50-220ENST00000544910 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.64□□□□□ -2.15
VPS50-220ENST00000544910 KRTAP5-2Q701N4 177 aa1.63□□□□□ -2.15
VPS50-220ENST00000544910 KRTAP9-7A8MTY7 169 aa1.6□□□□□ -2.15
VPS50-220ENST00000544910 SYNE2Q8WXH0 6885 aaKnown RBP1.57□□□□□ -2.16
VPS50-220ENST00000544910 KRTAP4-2Q9BYR5 136 aa1.57□□□□□ -2.16
VPS50-220ENST00000544910 FSIP2Q5CZC0 6907 aa1.56□□□□□ -2.16
VPS50-220ENST00000544910 MT4P47944 62 aa1.56□□□□□ -2.16
VPS50-220ENST00000544910 KRTAP20-1Q3LI63 56 aa1.55□□□□□ -2.16
VPS50-220ENST00000544910 KRTAP5-3Q6L8H2 238 aa1.55□□□□□ -2.16
VPS50-220ENST00000544910 KRTAP5-9P26371 169 aa1.54□□□□□ -2.16
VPS50-220ENST00000544910 KRTAP6-2Q3LI66 62 aa1.54□□□□□ -2.16
VPS50-220ENST00000544910 LCE4AQ5TA78 99 aa1.52□□□□□ -2.17
VPS50-220ENST00000544910 KRTAP2-2Q9BYT5 123 aa1.51□□□□□ -2.17
VPS50-220ENST00000544910 MACF1Q9UPN3 7388 aaKnown RBP1.49□□□□□ -2.17
VPS50-220ENST00000544910 FCGBPQ9Y6R7 5405 aaPredicted RBP1.49□□□□□ -2.17
VPS50-220ENST00000544910 LCE1BQ5T7P3 118 aa1.47□□□□□ -2.17
VPS50-220ENST00000544910 LCE1DQ5T752 114 aa1.47□□□□□ -2.17
VPS50-220ENST00000544910 KRTAP5-5Q701N2 237 aaPredicted RBP1.45□□□□□ -2.18
VPS50-220ENST00000544910 SYNE1Q8NF91 8797 aaKnown RBP1.43□□□□□ -2.18
VPS50-220ENST00000544910 MUC12Q9UKN1 5478 aa1.42□□□□□ -2.18
VPS50-220ENST00000544910 NEBP20929 6669 aa1.4□□□□□ -2.19
VPS50-220ENST00000544910 KRTAP20-2Q3LI61 65 aa1.34□□□□□ -2.19
VPS50-220ENST00000544910 MDN1Q9NU22 5596 aa1.32□□□□□ -2.2
VPS50-220ENST00000544910 KRTAP5-4Q6L8H1 288 aa1.31□□□□□ -2.2
VPS50-220ENST00000544910 KRTAP4-11Q9BYQ6 195 aa1.3□□□□□ -2.2
VPS50-220ENST00000544910 OBSCNQ5VST9 7968 aa1.29□□□□□ -2.2
VPS50-220ENST00000544910 DSTQ03001 7570 aaKnown RBP1.28□□□□□ -2.2
VPS50-220ENST00000544910 LCE1CQ5T751 118 aa1.22□□□□□ -2.21
VPS50-220ENST00000544910 LCE1EQ5T753 118 aa1.22□□□□□ -2.21
VPS50-220ENST00000544910 LCE1FQ5T754 118 aa1.22□□□□□ -2.21
VPS50-220ENST00000544910 HMCN1Q96RW7 5635 aa1.13□□□□□ -2.23
VPS50-220ENST00000544910 GPR98Q8WXG9 6306 aa1.09□□□□□ -2.23
VPS50-220ENST00000544910 KRTAP5-11Q6L8G4 156 aa1.09□□□□□ -2.24
VPS50-220ENST00000544910 KRTAP5-1Q6L8H4 278 aa1.09□□□□□ -2.24
VPS50-220ENST00000544910 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
VPS50-220ENST00000544910 KRTAP4-4Q9BYR3 166 aa1.07□□□□□ -2.24
VPS50-220ENST00000544910 MUC5ACP98088 5654 aa1.04□□□□□ -2.24
VPS50-220ENST00000544910 MUC5BQ9HC84 5762 aaPredicted RBP1.02□□□□□ -2.25
VPS50-220ENST00000544910 MUC19Q7Z5P9 8384 aa1.02□□□□□ -2.25
VPS50-220ENST00000544910 KRTAP5-8O75690 187 aa1.01□□□□□ -2.25
VPS50-220ENST00000544910 AHNAK2Q8IVF2 5795 aa1□□□□□ -2.25
VPS50-220ENST00000544910 KRTAP21-2Q3LI59 83 aa0.96□□□□□ -2.26
VPS50-220ENST00000544910 KRTAP5-7Q6L8G8 165 aa0.93□□□□□ -2.26
VPS50-220ENST00000544910 AHNAKQ09666 5890 aaKnown RBP0.88□□□□□ -2.27
VPS50-220ENST00000544910 KRTAP21-1Q3LI58 79 aa0.88□□□□□ -2.27
VPS50-220ENST00000544910 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
VPS50-220ENST00000544910 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 69 ms