RNA–Protein interactions for RNA: ENST00000543473.1

SUDS3-204, Transcript of SDS3 homolog, SIN3A corepressor complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SUDS3, Length 4,897 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SUDS3-204ENST00000543473 KRTAP19-6Q3LI70 58 aa6.28□□□□□ -1.4
SUDS3-204ENST00000543473 KRTAP19-3Q7Z4W3 81 aa6.25□□□□□ -1.41
SUDS3-204ENST00000543473 MT1EP04732 61 aa6.24□□□□□ -1.41
SUDS3-204ENST00000543473 KRTAP9-2Q9BYQ4 174 aa6.24□□□□□ -1.41
SUDS3-204ENST00000543473 LCE3EQ5T5B0 92 aa6.23□□□□□ -1.41
SUDS3-204ENST00000543473 SYNE1Q8NF91 8797 aaKnown RBP6.2□□□□□ -1.42
SUDS3-204ENST00000543473 LCE2DQ5TA82 110 aaPredicted RBP6.11□□□□□ -1.43
SUDS3-204ENST00000543473 MT1MQ8N339 61 aa6□□□□□ -1.45
SUDS3-204ENST00000543473 LOC100996750A0A140TA64 210 aa6□□□□□ -1.45
SUDS3-204ENST00000543473 KRTAP2-3P0C7H8 128 aa5.98□□□□□ -1.45
SUDS3-204ENST00000543473 KRTAP2-4Q9BYR9 128 aa5.98□□□□□ -1.45
SUDS3-204ENST00000543473 KRTAP2-1Q9BYU5 128 aa5.98□□□□□ -1.45
SUDS3-204ENST00000543473 KRTAP19-7Q3SYF9 63 aa5.97□□□□□ -1.45
SUDS3-204ENST00000543473 KRTAP4-3Q9BYR4 195 aa5.93□□□□□ -1.46
SUDS3-204ENST00000543473 PRM1P04553 51 aa5.9□□□□□ -1.47
SUDS3-204ENST00000543473 KRTAP9-6A8MVA2 160 aa5.81□□□□□ -1.48
SUDS3-204ENST00000543473 KRTAP9-6A0A140TA67 174 aa5.81□□□□□ -1.48
SUDS3-204ENST00000543473 USH2AO75445 5202 aa5.68□□□□□ -1.5
SUDS3-204ENST00000543473 KRTAP4-9Q9BYQ8 210 aa5.66□□□□□ -1.5
SUDS3-204ENST00000543473 MT3P25713 68 aa5.65□□□□□ -1.5
SUDS3-204ENST00000543473 MT4P47944 62 aa5.63□□□□□ -1.51
SUDS3-204ENST00000543473 MT1AP04731 61 aa5.55□□□□□ -1.52
SUDS3-204ENST00000543473 SYNE2Q8WXH0 6885 aaKnown RBP5.54□□□□□ -1.52
SUDS3-204ENST00000543473 OBSCNQ5VST9 7968 aa5.52□□□□□ -1.53
SUDS3-204ENST00000543473 KRTAP9-7A8MTY7 169 aa5.49□□□□□ -1.53
SUDS3-204ENST00000543473 KRTAP6-3Q3LI67 103 aa5.47□□□□□ -1.53
SUDS3-204ENST00000543473 FCGBPQ9Y6R7 5405 aaPredicted RBP5.46□□□□□ -1.54
SUDS3-204ENST00000543473 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.45□□□□□ -1.54
SUDS3-204ENST00000543473 LCE1AQ5T7P2 110 aa5.45□□□□□ -1.54
SUDS3-204ENST00000543473 LCE5AQ5TCM9 118 aa5.44□□□□□ -1.54
SUDS3-204ENST00000543473 DSTQ03001 7570 aaKnown RBP5.43□□□□□ -1.54
SUDS3-204ENST00000543473 KMT2DO14686 5537 aa5.42□□□□□ -1.54
SUDS3-204ENST00000543473 KRTAP6-1Q3LI64 71 aa5.32□□□□□ -1.56
SUDS3-204ENST00000543473 KRTAP6-2Q3LI66 62 aa5.26□□□□□ -1.57
SUDS3-204ENST00000543473 KRTAP20-1Q3LI63 56 aa5.25□□□□□ -1.57
SUDS3-204ENST00000543473 SSPOA2VEC9 5147 aa5.24□□□□□ -1.57
SUDS3-204ENST00000543473 MACF1Q9UPN3 7388 aaKnown RBP5.22□□□□□ -1.57
SUDS3-204ENST00000543473 LCE1DQ5T752 114 aa5.21□□□□□ -1.58
SUDS3-204ENST00000543473 LCE1BQ5T7P3 118 aa5.2□□□□□ -1.58
SUDS3-204ENST00000543473 MUC12Q9UKN1 5478 aa5.15□□□□□ -1.59
SUDS3-204ENST00000543473 KRTAP9-4Q9BYQ2 154 aa5.08□□□□□ -1.6
SUDS3-204ENST00000543473 KRTAP2-2Q9BYT5 123 aa5.04□□□□□ -1.6
SUDS3-204ENST00000543473 LCE4AQ5TA78 99 aa5.01□□□□□ -1.61
SUDS3-204ENST00000543473 KRTAP5-9P26371 169 aa4.96□□□□□ -1.62
SUDS3-204ENST00000543473 MDN1Q9NU22 5596 aa4.76□□□□□ -1.65
SUDS3-204ENST00000543473 NEBP20929 6669 aa4.72□□□□□ -1.65
SUDS3-204ENST00000543473 KRTAP4-6Q9BYQ5 205 aa4.56□□□□□ -1.68
SUDS3-204ENST00000543473 MUC19Q7Z5P9 8384 aa4.45□□□□□ -1.7
SUDS3-204ENST00000543473 KRTAP20-2Q3LI61 65 aa4.44□□□□□ -1.7
SUDS3-204ENST00000543473 KRTAP5-5Q701N2 237 aaPredicted RBP4.42□□□□□ -1.7
SUDS3-204ENST00000543473 KRTAP4-11Q9BYQ6 195 aa4.36□□□□□ -1.71
SUDS3-204ENST00000543473 LCE1CQ5T751 118 aa4.22□□□□□ -1.73
SUDS3-204ENST00000543473 LCE1EQ5T753 118 aa4.22□□□□□ -1.73
SUDS3-204ENST00000543473 LCE1FQ5T754 118 aa4.22□□□□□ -1.73
SUDS3-204ENST00000543473 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
SUDS3-204ENST00000543473 KRTAP5-4Q6L8H1 288 aa4.12□□□□□ -1.75
SUDS3-204ENST00000543473 GPR98Q8WXG9 6306 aa4.12□□□□□ -1.75
SUDS3-204ENST00000543473 MUC5ACP98088 5654 aa3.88□□□□□ -1.79
SUDS3-204ENST00000543473 KRTAP4-4Q9BYR3 166 aa3.79□□□□□ -1.8
SUDS3-204ENST00000543473 KRTAP4-12Q9BQ66 201 aa3.75□□□□□ -1.81
SUDS3-204ENST00000543473 KRTAP4-2Q9BYR5 136 aa3.75□□□□□ -1.81
SUDS3-204ENST00000543473 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
SUDS3-204ENST00000543473 HMCN1Q96RW7 5635 aa3.7□□□□□ -1.82
SUDS3-204ENST00000543473 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
SUDS3-204ENST00000543473 KRTAP5-2Q701N4 177 aa3.51□□□□□ -1.85
SUDS3-204ENST00000543473 KRTAP5-8O75690 187 aa3.42□□□□□ -1.86
SUDS3-204ENST00000543473 KRTAP5-10Q6L8G5 202 aa3.41□□□□□ -1.86
SUDS3-204ENST00000543473 KRTAP5-1Q6L8H4 278 aa3.11□□□□□ -1.91
SUDS3-204ENST00000543473 MUC5BQ9HC84 5762 aaPredicted RBP3.02□□□□□ -1.93
SUDS3-204ENST00000543473 AHNAKQ09666 5890 aaKnown RBP3□□□□□ -1.93
SUDS3-204ENST00000543473 KRTAP5-11Q6L8G4 156 aa2.97□□□□□ -1.93
SUDS3-204ENST00000543473 KRTAP21-2Q3LI59 83 aa2.88□□□□□ -1.95
SUDS3-204ENST00000543473 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
SUDS3-204ENST00000543473 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
SUDS3-204ENST00000543473 PHGR1C9JFL3 82 aa2.73□□□□□ -1.97
SUDS3-204ENST00000543473 KRTAP5-7Q6L8G8 165 aa2.6□□□□□ -1.99
SUDS3-204ENST00000543473 MUC16Q8WXI7 14507 aa1.72□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 516 ms