RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
CTNNA1-243ENST00000540387 KRTAP12-3P60328 96 aa3.62□□□□□ -1.83
CTNNA1-243ENST00000540387 SSPOA2VEC9 5147 aa3.59□□□□□ -1.83
CTNNA1-243ENST00000540387 MT1XP80297 61 aa3.56□□□□□ -1.84
CTNNA1-243ENST00000540387 KRTAP10-5P60370 271 aa3.56□□□□□ -1.84
CTNNA1-243ENST00000540387 KRTAP19-6Q3LI70 58 aa3.53□□□□□ -1.84
CTNNA1-243ENST00000540387 CRCT1Q9UGL9 99 aa3.48□□□□□ -1.85
CTNNA1-243ENST00000540387 FCGBPQ9Y6R7 5405 aaPredicted RBP3.46□□□□□ -1.85
CTNNA1-243ENST00000540387 LCE3CQ5T5A8 94 aa3.44□□□□□ -1.86
CTNNA1-243ENST00000540387 KRTAP2-3P0C7H8 128 aa3.43□□□□□ -1.86
CTNNA1-243ENST00000540387 KRTAP10-7P60409 375 aaPredicted RBP3.43□□□□□ -1.86
CTNNA1-243ENST00000540387 KRTAP2-4Q9BYR9 128 aa3.43□□□□□ -1.86
CTNNA1-243ENST00000540387 KRTAP2-1Q9BYU5 128 aa3.43□□□□□ -1.86
CTNNA1-243ENST00000540387 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.87
CTNNA1-243ENST00000540387 KMT2DO14686 5537 aa3.38□□□□□ -1.87
CTNNA1-243ENST00000540387 KRTAP5-3Q6L8H2 238 aa3.34□□□□□ -1.88
CTNNA1-243ENST00000540387 KRTAP19-5Q3LI72 72 aa3.31□□□□□ -1.88
CTNNA1-243ENST00000540387 MACF1Q9UPN3 7388 aaKnown RBP3.3□□□□□ -1.88
CTNNA1-243ENST00000540387 SYNE2Q8WXH0 6885 aaKnown RBP3.24□□□□□ -1.89
CTNNA1-243ENST00000540387 KRTAP2-2Q9BYT5 123 aa3.2□□□□□ -1.9
CTNNA1-243ENST00000540387 KRTAP19-7Q3SYF9 63 aa3.19□□□□□ -1.9
CTNNA1-243ENST00000540387 KRTAP12-4P60329 112 aa3.17□□□□□ -1.9
CTNNA1-243ENST00000540387 LCE1AQ5T7P2 110 aa3.17□□□□□ -1.9
CTNNA1-243ENST00000540387 SPRR2FQ96RM1 72 aa3.15□□□□□ -1.91
CTNNA1-243ENST00000540387 MUC12Q9UKN1 5478 aa3.14□□□□□ -1.91
CTNNA1-243ENST00000540387 MT1EP04732 61 aa3.12□□□□□ -1.91
CTNNA1-243ENST00000540387 KRTAP5-9P26371 169 aa3.12□□□□□ -1.91
CTNNA1-243ENST00000540387 KRTAP6-3Q3LI67 103 aa3.1□□□□□ -1.91
CTNNA1-243ENST00000540387 MDN1Q9NU22 5596 aa3.07□□□□□ -1.92
CTNNA1-243ENST00000540387 MT1LQ93083 61 aa3.05□□□□□ -1.92
CTNNA1-243ENST00000540387 KRTAP19-3Q7Z4W3 81 aa3.02□□□□□ -1.93
CTNNA1-243ENST00000540387 SPRR2EP22531 72 aa3□□□□□ -1.93
CTNNA1-243ENST00000540387 SPRR2BP35325 72 aa3□□□□□ -1.93
CTNNA1-243ENST00000540387 SPRR2AP35326 72 aa3□□□□□ -1.93
CTNNA1-243ENST00000540387 MT1GP13640 62 aa2.98□□□□□ -1.93
CTNNA1-243ENST00000540387 LCE1EQ5T753 118 aa2.96□□□□□ -1.94
CTNNA1-243ENST00000540387 MT1MQ8N339 61 aa2.95□□□□□ -1.94
CTNNA1-243ENST00000540387 DSTQ03001 7570 aaKnown RBP2.94□□□□□ -1.94
CTNNA1-243ENST00000540387 LCE1FQ5T754 118 aa2.93□□□□□ -1.94
CTNNA1-243ENST00000540387 KRTAP4-3Q9BYR4 195 aa2.93□□□□□ -1.94
CTNNA1-243ENST00000540387 NEBP20929 6669 aa2.9□□□□□ -1.95
CTNNA1-243ENST00000540387 SPRR2DP22532 72 aa2.88□□□□□ -1.95
CTNNA1-243ENST00000540387 PRM1P04553 51 aa2.88□□□□□ -1.95
CTNNA1-243ENST00000540387 KRTAP5-5Q701N2 237 aaPredicted RBP2.81□□□□□ -1.96
CTNNA1-243ENST00000540387 SYNE1Q8NF91 8797 aaKnown RBP2.76□□□□□ -1.97
CTNNA1-243ENST00000540387 MT3P25713 68 aa2.75□□□□□ -1.97
CTNNA1-243ENST00000540387 GPR98Q8WXG9 6306 aa2.74□□□□□ -1.97
CTNNA1-243ENST00000540387 MT1AP04731 61 aa2.74□□□□□ -1.97
CTNNA1-243ENST00000540387 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
CTNNA1-243ENST00000540387 KRTAP20-1Q3LI63 56 aa2.73□□□□□ -1.97
CTNNA1-243ENST00000540387 LCE3DQ9BYE3 92 aa2.73□□□□□ -1.97
CTNNA1-243ENST00000540387 KRTAP5-11Q6L8G4 156 aa2.68□□□□□ -1.98
CTNNA1-243ENST00000540387 KRTAP6-2Q3LI66 62 aa2.62□□□□□ -1.99
CTNNA1-243ENST00000540387 KRTAP6-1Q3LI64 71 aa2.58□□□□□ -2
CTNNA1-243ENST00000540387 KRTAP5-4Q6L8H1 288 aa2.58□□□□□ -2
CTNNA1-243ENST00000540387 HMCN1Q96RW7 5635 aa2.55□□□□□ -2
CTNNA1-243ENST00000540387 MT4P47944 62 aa2.54□□□□□ -2
CTNNA1-243ENST00000540387 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.5□□□□□ -2.01
CTNNA1-243ENST00000540387 OBSCNQ5VST9 7968 aa2.49□□□□□ -2.01
CTNNA1-243ENST00000540387 KRTAP20-2Q3LI61 65 aa2.43□□□□□ -2.02
CTNNA1-243ENST00000540387 KRTAP5-2Q701N4 177 aa2.32□□□□□ -2.04
CTNNA1-243ENST00000540387 KRTAP5-1Q6L8H4 278 aa2.28□□□□□ -2.04
CTNNA1-243ENST00000540387 MUC19Q7Z5P9 8384 aa2.24□□□□□ -2.05
CTNNA1-243ENST00000540387 AHNAKQ09666 5890 aaKnown RBP2.22□□□□□ -2.05
CTNNA1-243ENST00000540387 MUC5BQ9HC84 5762 aaPredicted RBP2.21□□□□□ -2.05
CTNNA1-243ENST00000540387 AHNAK2Q8IVF2 5795 aa2.2□□□□□ -2.06
CTNNA1-243ENST00000540387 KRTAP4-4Q9BYR3 166 aa2.15□□□□□ -2.06
CTNNA1-243ENST00000540387 KRTAP5-10Q6L8G5 202 aa2.14□□□□□ -2.07
CTNNA1-243ENST00000540387 KRTAP5-8O75690 187 aa2.05□□□□□ -2.08
CTNNA1-243ENST00000540387 KRTAP5-7Q6L8G8 165 aa2.04□□□□□ -2.08
CTNNA1-243ENST00000540387 LCE1BQ5T7P3 118 aa1.96□□□□□ -2.1
CTNNA1-243ENST00000540387 MUC5ACP98088 5654 aa1.96□□□□□ -2.1
CTNNA1-243ENST00000540387 LCE1CQ5T751 118 aa1.93□□□□□ -2.1
CTNNA1-243ENST00000540387 KRTAP21-1Q3LI58 79 aa1.85□□□□□ -2.11
CTNNA1-243ENST00000540387 KRTAP21-2Q3LI59 83 aa1.69□□□□□ -2.14
CTNNA1-243ENST00000540387 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
CTNNA1-243ENST00000540387 MUC16Q8WXI7 14507 aa0.92□□□□□ -2.26
Retrieved 77 of 20,778 RNA–protein pairs in 137 ms