RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LCE3AQ5TA76 89 aa4.69□□□□□ -1.66
CLIP1-208ENST00000537004 SPRR5A0A1B0GTR4 108 aa4.66□□□□□ -1.66
CLIP1-208ENST00000537004 KRTAP10-12P60413 245 aa4.64□□□□□ -1.67
CLIP1-208ENST00000537004 SPRR2EP22531 72 aa4.63□□□□□ -1.67
CLIP1-208ENST00000537004 SPRR2BP35325 72 aa4.63□□□□□ -1.67
CLIP1-208ENST00000537004 SPRR2AP35326 72 aa4.63□□□□□ -1.67
CLIP1-208ENST00000537004 KRTAP20-1Q3LI63 56 aa4.63□□□□□ -1.67
CLIP1-208ENST00000537004 LCE1AQ5T7P2 110 aa4.58□□□□□ -1.68
CLIP1-208ENST00000537004 KRTAP2-3P0C7H8 128 aa4.51□□□□□ -1.69
CLIP1-208ENST00000537004 KRTAP2-4Q9BYR9 128 aa4.51□□□□□ -1.69
CLIP1-208ENST00000537004 KRTAP12-3P60328 96 aa4.5□□□□□ -1.69
CLIP1-208ENST00000537004 SPRR2DP22532 72 aa4.46□□□□□ -1.69
CLIP1-208ENST00000537004 KRTAP19-5Q3LI72 72 aa4.41□□□□□ -1.7
CLIP1-208ENST00000537004 KRTAP19-7Q3SYF9 63 aa4.39□□□□□ -1.71
CLIP1-208ENST00000537004 INE1O15225 51 aa4.38□□□□□ -1.71
CLIP1-208ENST00000537004 KRTAP2-2Q9BYT5 123 aa4.38□□□□□ -1.71
CLIP1-208ENST00000537004 KRTAP2-1Q9BYU5 128 aa4.38□□□□□ -1.71
CLIP1-208ENST00000537004 DSTQ03001 7570 aaKnown RBP4.35□□□□□ -1.71
CLIP1-208ENST00000537004 LCE3BQ5TA77 95 aa4.34□□□□□ -1.71
CLIP1-208ENST00000537004 MT1EP04732 61 aa4.33□□□□□ -1.72
CLIP1-208ENST00000537004 LCE5AQ5TCM9 118 aa4.29□□□□□ -1.72
CLIP1-208ENST00000537004 KRTAP19-3Q7Z4W3 81 aa4.28□□□□□ -1.73
CLIP1-208ENST00000537004 LCE3CQ5T5A8 94 aa4.22□□□□□ -1.73
CLIP1-208ENST00000537004 LOC100996750A0A140TA64 210 aa4.19□□□□□ -1.74
CLIP1-208ENST00000537004 KRTAP4-6Q9BYQ5 205 aa4.19□□□□□ -1.74
CLIP1-208ENST00000537004 MT1GP13640 62 aa4.16□□□□□ -1.74
CLIP1-208ENST00000537004 MT1LQ93083 61 aa4.16□□□□□ -1.74
CLIP1-208ENST00000537004 KRTAP19-4Q3LI73 84 aa4.12□□□□□ -1.75
CLIP1-208ENST00000537004 MT1MQ8N339 61 aa4.12□□□□□ -1.75
CLIP1-208ENST00000537004 KRTAP4-3Q9BYR4 195 aa4.09□□□□□ -1.75
CLIP1-208ENST00000537004 KRTAP4-9Q9BYQ8 210 aa4.09□□□□□ -1.76
CLIP1-208ENST00000537004 KRTAP4-7Q9BYR0 210 aa4.09□□□□□ -1.76
CLIP1-208ENST00000537004 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
CLIP1-208ENST00000537004 HMCN1Q96RW7 5635 aa3.97□□□□□ -1.77
CLIP1-208ENST00000537004 LCE1DQ5T752 114 aa3.97□□□□□ -1.77
CLIP1-208ENST00000537004 MT4P47944 62 aa3.94□□□□□ -1.78
CLIP1-208ENST00000537004 LCE4AQ5TA78 99 aa3.9□□□□□ -1.78
CLIP1-208ENST00000537004 KRTAP5-4Q6L8H1 288 aa3.88□□□□□ -1.79
CLIP1-208ENST00000537004 GPR98Q8WXG9 6306 aa3.87□□□□□ -1.79
CLIP1-208ENST00000537004 KRTAP5-5Q701N2 237 aaPredicted RBP3.77□□□□□ -1.81
CLIP1-208ENST00000537004 AHNAK2Q8IVF2 5795 aa3.74□□□□□ -1.81
CLIP1-208ENST00000537004 KRTAP20-2Q3LI61 65 aa3.67□□□□□ -1.82
CLIP1-208ENST00000537004 SYNE1Q8NF91 8797 aaKnown RBP3.65□□□□□ -1.83
CLIP1-208ENST00000537004 KRTAP4-12Q9BQ66 201 aa3.65□□□□□ -1.83
CLIP1-208ENST00000537004 KRTAP12-4P60329 112 aa3.63□□□□□ -1.83
CLIP1-208ENST00000537004 KRTAP5-10Q6L8G5 202 aa3.63□□□□□ -1.83
CLIP1-208ENST00000537004 KRTAP9-4Q9BYQ2 154 aa3.63□□□□□ -1.83
CLIP1-208ENST00000537004 KRTAP9-9Q9BYP9 154 aa3.62□□□□□ -1.83
CLIP1-208ENST00000537004 KRTAP5-3Q6L8H2 238 aa3.57□□□□□ -1.84
CLIP1-208ENST00000537004 KRTAP6-1Q3LI64 71 aa3.53□□□□□ -1.84
CLIP1-208ENST00000537004 MT1AP04731 61 aa3.52□□□□□ -1.85
CLIP1-208ENST00000537004 KRTAP5-7Q6L8G8 165 aa3.46□□□□□ -1.86
CLIP1-208ENST00000537004 KRTAP5-2Q701N4 177 aa3.41□□□□□ -1.86
CLIP1-208ENST00000537004 OBSCNQ5VST9 7968 aa3.38□□□□□ -1.87
CLIP1-208ENST00000537004 KRTAP6-2Q3LI66 62 aa3.36□□□□□ -1.87
CLIP1-208ENST00000537004 KRTAP4-11Q9BYQ6 195 aa3.34□□□□□ -1.87
CLIP1-208ENST00000537004 KRTAP5-8O75690 187 aa3.23□□□□□ -1.89
CLIP1-208ENST00000537004 KRTAP4-2Q9BYR5 136 aa3.22□□□□□ -1.89
CLIP1-208ENST00000537004 MT3P25713 68 aa3.2□□□□□ -1.9
CLIP1-208ENST00000537004 LCE3DQ9BYE3 92 aa3.19□□□□□ -1.9
CLIP1-208ENST00000537004 MUC5BQ9HC84 5762 aaPredicted RBP3.13□□□□□ -1.91
CLIP1-208ENST00000537004 LCE3EQ5T5B0 92 aa3.12□□□□□ -1.91
CLIP1-208ENST00000537004 KRTAP5-1Q6L8H4 278 aa3.07□□□□□ -1.92
CLIP1-208ENST00000537004 MUC5ACP98088 5654 aa3.05□□□□□ -1.92
CLIP1-208ENST00000537004 AHNAKQ09666 5890 aaKnown RBP3.02□□□□□ -1.93
CLIP1-208ENST00000537004 PRM1P04553 51 aa2.98□□□□□ -1.93
CLIP1-208ENST00000537004 LCE1EQ5T753 118 aa2.91□□□□□ -1.94
CLIP1-208ENST00000537004 LCE1FQ5T754 118 aa2.9□□□□□ -1.95
CLIP1-208ENST00000537004 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
CLIP1-208ENST00000537004 LCE1CQ5T751 118 aa2.72□□□□□ -1.97
CLIP1-208ENST00000537004 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.46□□□□□ -2.02
CLIP1-208ENST00000537004 KRTAP5-11Q6L8G4 156 aa2.45□□□□□ -2.02
CLIP1-208ENST00000537004 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
CLIP1-208ENST00000537004 KRTAP4-4Q9BYR3 166 aa2.17□□□□□ -2.06
CLIP1-208ENST00000537004 PHGR1C9JFL3 82 aa2.12□□□□□ -2.07
CLIP1-208ENST00000537004 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
CLIP1-208ENST00000537004 KRTAP21-1Q3LI58 79 aa1.96□□□□□ -2.1
CLIP1-208ENST00000537004 MUC16Q8WXI7 14507 aa1.35□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 8.9 ms